Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VRK3Q8IV63 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.59■□□□□ 0.57
VRK3Q8IV63 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
VRK3Q8IV63 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.59■□□□□ 0.57
VRK3Q8IV63 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.58■□□□□ 0.57
VRK3Q8IV63 KRT8P9-201ENST00000558927 1449 ntBASIC18.58■□□□□ 0.57
VRK3Q8IV63 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
VRK3Q8IV63 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
VRK3Q8IV63 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.58■□□□□ 0.57
VRK3Q8IV63 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.57
VRK3Q8IV63 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.58■□□□□ 0.57
VRK3Q8IV63 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.58■□□□□ 0.57
VRK3Q8IV63 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
VRK3Q8IV63 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VRK3Q8IV63 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
VRK3Q8IV63 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.56
VRK3Q8IV63 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VRK3Q8IV63 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.58■□□□□ 0.56
VRK3Q8IV63 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.58■□□□□ 0.56
VRK3Q8IV63 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.58■□□□□ 0.56
VRK3Q8IV63 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VRK3Q8IV63 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VRK3Q8IV63 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.58■□□□□ 0.56
VRK3Q8IV63 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.58■□□□□ 0.56
VRK3Q8IV63 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.58■□□□□ 0.56
VRK3Q8IV63 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.58■□□□□ 0.56
VRK3Q8IV63 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VRK3Q8IV63 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VRK3Q8IV63 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
VRK3Q8IV63 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.58■□□□□ 0.56
VRK3Q8IV63 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VRK3Q8IV63 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VRK3Q8IV63 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
VRK3Q8IV63 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
VRK3Q8IV63 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.58■□□□□ 0.56
VRK3Q8IV63 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VRK3Q8IV63 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VRK3Q8IV63 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VRK3Q8IV63 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VRK3Q8IV63 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
VRK3Q8IV63 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.57■□□□□ 0.56
VRK3Q8IV63 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
VRK3Q8IV63 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VRK3Q8IV63 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VRK3Q8IV63 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.57■□□□□ 0.56
VRK3Q8IV63 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.57■□□□□ 0.56
VRK3Q8IV63 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
VRK3Q8IV63 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VRK3Q8IV63 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VRK3Q8IV63 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VRK3Q8IV63 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VRK3Q8IV63 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VRK3Q8IV63 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VRK3Q8IV63 FITM1-202ENST00000559294 800 ntBASIC18.57■□□□□ 0.56
VRK3Q8IV63 AP005242.2-201ENST00000580065 1175 ntBASIC18.57■□□□□ 0.56
VRK3Q8IV63 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VRK3Q8IV63 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.57■□□□□ 0.56
VRK3Q8IV63 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VRK3Q8IV63 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VRK3Q8IV63 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VRK3Q8IV63 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
VRK3Q8IV63 TNXA-203ENST00000507684 2038 ntBASIC18.57■□□□□ 0.56
VRK3Q8IV63 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.57■□□□□ 0.56
VRK3Q8IV63 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VRK3Q8IV63 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VRK3Q8IV63 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VRK3Q8IV63 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
VRK3Q8IV63 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.57■□□□□ 0.56
VRK3Q8IV63 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.57■□□□□ 0.56
VRK3Q8IV63 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VRK3Q8IV63 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
VRK3Q8IV63 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VRK3Q8IV63 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
VRK3Q8IV63 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.56■□□□□ 0.56
VRK3Q8IV63 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.56■□□□□ 0.56
VRK3Q8IV63 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VRK3Q8IV63 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.56■□□□□ 0.56
VRK3Q8IV63 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VRK3Q8IV63 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.56■□□□□ 0.56
VRK3Q8IV63 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VRK3Q8IV63 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
VRK3Q8IV63 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
VRK3Q8IV63 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VRK3Q8IV63 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VRK3Q8IV63 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.56■□□□□ 0.56
VRK3Q8IV63 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VRK3Q8IV63 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
VRK3Q8IV63 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
VRK3Q8IV63 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VRK3Q8IV63 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VRK3Q8IV63 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
VRK3Q8IV63 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VRK3Q8IV63 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.55■□□□□ 0.56
VRK3Q8IV63 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.55■□□□□ 0.56
VRK3Q8IV63 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.55■□□□□ 0.56
VRK3Q8IV63 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
VRK3Q8IV63 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
VRK3Q8IV63 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VRK3Q8IV63 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VRK3Q8IV63 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms