Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 IPPK-202ENST00000375522 882 ntTSL 3 BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 AC008040.2-201ENST00000461049 708 ntBASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 NME1-207ENST00000480143 964 ntTSL 2 BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 DBP-204ENST00000599385 709 ntTSL 3 BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 AC130371.2-201ENST00000619443 611 ntBASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 AC093458.2-201ENST00000623150 629 ntBASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
SH3RF1Q7Z6J0 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
SH3RF1Q7Z6J0 AC104417.2-201ENST00000562989 1793 ntBASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 AC141586.3-201ENST00000562166 1838 ntBASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 YBX1P10-201ENST00000444752 975 ntBASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 AP000692.2-201ENST00000608391 879 ntBASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 AC092647.4-201ENST00000457211 535 ntBASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 AC011558.1-201ENST00000623459 338 ntBASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 AC131212.4-201ENST00000623606 975 ntBASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 VPS72-207ENST00000640458 689 ntTSL 5 BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 AC004408.2-201ENST00000623613 2777 ntBASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 AL450487.1-201ENST00000426799 995 ntBASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 FAM207BP-201ENST00000447172 505 ntBASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 COX11P1-201ENST00000489116 835 ntBASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SH3RF1Q7Z6J0 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SH3RF1Q7Z6J0 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SH3RF1Q7Z6J0 KRT8P8-201ENST00000434750 1448 ntBASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms