Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 IPPK-202ENST00000375522 882 ntTSL 3 BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 AC008040.2-201ENST00000461049 708 ntBASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 NME1-207ENST00000480143 964 ntTSL 2 BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 DBP-204ENST00000599385 709 ntTSL 3 BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 AC130371.2-201ENST00000619443 611 ntBASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 AC093458.2-201ENST00000623150 629 ntBASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SH3RF1Q7Z6J0 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
SH3RF1Q7Z6J0 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
SH3RF1Q7Z6J0 AC104417.2-201ENST00000562989 1793 ntBASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 AC141586.3-201ENST00000562166 1838 ntBASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 YBX1P10-201ENST00000444752 975 ntBASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 AP000692.2-201ENST00000608391 879 ntBASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
SH3RF1Q7Z6J0 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 AC092647.4-201ENST00000457211 535 ntBASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 AC011558.1-201ENST00000623459 338 ntBASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 AC131212.4-201ENST00000623606 975 ntBASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 VPS72-207ENST00000640458 689 ntTSL 5 BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SH3RF1Q7Z6J0 AC004408.2-201ENST00000623613 2777 ntBASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 AL450487.1-201ENST00000426799 995 ntBASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 FAM207BP-201ENST00000447172 505 ntBASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 COX11P1-201ENST00000489116 835 ntBASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SH3RF1Q7Z6J0 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SH3RF1Q7Z6J0 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SH3RF1Q7Z6J0 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SH3RF1Q7Z6J0 KRT8P8-201ENST00000434750 1448 ntBASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms