Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13CQ709C8 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13CQ709C8 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13CQ709C8 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS13CQ709C8 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS13CQ709C8 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13CQ709C8 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VPS13CQ709C8 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VPS13CQ709C8 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
VPS13CQ709C8 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS13CQ709C8 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VPS13CQ709C8 PNN-202ENST00000553331 656 ntTSL 3 BASIC15.83■□□□□ 0.13
VPS13CQ709C8 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.83■□□□□ 0.13
VPS13CQ709C8 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS13CQ709C8 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS13CQ709C8 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS13CQ709C8 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC15.83■□□□□ 0.12
VPS13CQ709C8 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS13CQ709C8 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS13CQ709C8 DRAXINP1-201ENST00000437611 948 ntBASIC15.83■□□□□ 0.12
VPS13CQ709C8 FAAHP1-202ENST00000446499 1238 ntBASIC15.83■□□□□ 0.12
VPS13CQ709C8 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
VPS13CQ709C8 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS13CQ709C8 CIB2-208ENST00000560618 804 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS13CQ709C8 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
VPS13CQ709C8 AL157888.1-201ENST00000631930 593 ntBASIC15.83■□□□□ 0.12
VPS13CQ709C8 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS13CQ709C8 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VPS13CQ709C8 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS13CQ709C8 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VPS13CQ709C8 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS13CQ709C8 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC15.83■□□□□ 0.12
VPS13CQ709C8 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VPS13CQ709C8 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VPS13CQ709C8 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS13CQ709C8 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS13CQ709C8 KRT18P13-201ENST00000400056 1290 ntBASIC15.83■□□□□ 0.12
VPS13CQ709C8 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS13CQ709C8 AL160237.2-201ENST00000556165 472 ntBASIC15.83■□□□□ 0.12
VPS13CQ709C8 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.83■□□□□ 0.12
VPS13CQ709C8 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
VPS13CQ709C8 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VPS13CQ709C8 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
VPS13CQ709C8 AC243591.1-201ENST00000452967 1364 ntBASIC15.83■□□□□ 0.12
VPS13CQ709C8 AC092720.2-201ENST00000602388 1665 ntBASIC15.82■□□□□ 0.12
VPS13CQ709C8 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13CQ709C8 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13CQ709C8 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
VPS13CQ709C8 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13CQ709C8 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13CQ709C8 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13CQ709C8 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC15.82■□□□□ 0.12
VPS13CQ709C8 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS13CQ709C8 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC15.82■□□□□ 0.12
VPS13CQ709C8 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13CQ709C8 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC15.82■□□□□ 0.12
VPS13CQ709C8 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13CQ709C8 LSM5-204ENST00000409909 740 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS13CQ709C8 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS13CQ709C8 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC15.82■□□□□ 0.12
VPS13CQ709C8 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC15.82■□□□□ 0.12
VPS13CQ709C8 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13CQ709C8 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13CQ709C8 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
VPS13CQ709C8 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS13CQ709C8 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13CQ709C8 BUB3-202ENST00000368859 667 ntTSL 3 BASIC15.82■□□□□ 0.12
VPS13CQ709C8 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.82■□□□□ 0.12
VPS13CQ709C8 AF228730.7-201ENST00000641842 219 ntBASIC15.82■□□□□ 0.12
VPS13CQ709C8 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
VPS13CQ709C8 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13CQ709C8 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13CQ709C8 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC15.82■□□□□ 0.12
VPS13CQ709C8 TLE1-202ENST00000376484 666 ntTSL 3 BASIC15.81■□□□□ 0.12
VPS13CQ709C8 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13CQ709C8 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13CQ709C8 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC15.81■□□□□ 0.12
VPS13CQ709C8 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS13CQ709C8 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13CQ709C8 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13CQ709C8 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13CQ709C8 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13CQ709C8 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.81■□□□□ 0.12
VPS13CQ709C8 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13CQ709C8 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.81■□□□□ 0.12
VPS13CQ709C8 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC15.81■□□□□ 0.12
VPS13CQ709C8 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13CQ709C8 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13CQ709C8 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
VPS13CQ709C8 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC15.81■□□□□ 0.12
VPS13CQ709C8 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC15.81■□□□□ 0.12
VPS13CQ709C8 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13CQ709C8 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13CQ709C8 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
VPS13CQ709C8 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS13CQ709C8 AL121672.3-201ENST00000608644 468 ntBASIC15.81■□□□□ 0.12
VPS13CQ709C8 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
VPS13CQ709C8 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13CQ709C8 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13CQ709C8 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms