Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SHROOM1Q2M3G4 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SHROOM1Q2M3G4 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 NDUFV2-AS1-203ENST00000608008 779 ntBASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
SHROOM1Q2M3G4 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
SHROOM1Q2M3G4 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
SHROOM1Q2M3G4 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SHROOM1Q2M3G4 HBZP1-201ENST00000354915 429 ntBASIC22.19■■□□□ 1.14
SHROOM1Q2M3G4 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC22.19■■□□□ 1.14
SHROOM1Q2M3G4 RASA4DP-201ENST00000460726 1199 ntBASIC22.19■■□□□ 1.14
SHROOM1Q2M3G4 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC22.19■■□□□ 1.14
SHROOM1Q2M3G4 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC22.19■■□□□ 1.14
SHROOM1Q2M3G4 AC012313.10-201ENST00000623509 926 ntBASIC22.19■■□□□ 1.14
SHROOM1Q2M3G4 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC22.19■■□□□ 1.14
SHROOM1Q2M3G4 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SHROOM1Q2M3G4 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
SHROOM1Q2M3G4 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
SHROOM1Q2M3G4 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SHROOM1Q2M3G4 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SHROOM1Q2M3G4 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC22.19■■□□□ 1.14
SHROOM1Q2M3G4 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
SHROOM1Q2M3G4 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SHROOM1Q2M3G4 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
SHROOM1Q2M3G4 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SHROOM1Q2M3G4 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC22.18■■□□□ 1.14
SHROOM1Q2M3G4 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC22.18■■□□□ 1.14
SHROOM1Q2M3G4 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SHROOM1Q2M3G4 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
SHROOM1Q2M3G4 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SHROOM1Q2M3G4 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC22.18■■□□□ 1.14
SHROOM1Q2M3G4 CNP-204ENST00000472031 1019 ntTSL 2 BASIC22.18■■□□□ 1.14
SHROOM1Q2M3G4 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC22.18■■□□□ 1.14
SHROOM1Q2M3G4 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC22.18■■□□□ 1.14
SHROOM1Q2M3G4 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC22.18■■□□□ 1.14
SHROOM1Q2M3G4 FGF14-AS2-201ENST00000606448 1074 ntBASIC22.18■■□□□ 1.14
SHROOM1Q2M3G4 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SHROOM1Q2M3G4 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
SHROOM1Q2M3G4 BID-204ENST00000399767 2129 ntTSL 2 BASIC22.18■■□□□ 1.14
SHROOM1Q2M3G4 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC22.18■■□□□ 1.14
SHROOM1Q2M3G4 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
SHROOM1Q2M3G4 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
SHROOM1Q2M3G4 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 HCG4P8-203ENST00000443049 980 ntBASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 AC079602.3-201ENST00000623931 403 ntBASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC22.16■■□□□ 1.14
SHROOM1Q2M3G4 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms