Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SOX4Q06945 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SOX4Q06945 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SOX4Q06945 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SOX4Q06945 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
SOX4Q06945 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.32■□□□□ 0.84
SOX4Q06945 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SOX4Q06945 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC20.32■□□□□ 0.84
SOX4Q06945 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SOX4Q06945 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.32■□□□□ 0.84
SOX4Q06945 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.32■□□□□ 0.84
SOX4Q06945 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.32■□□□□ 0.84
SOX4Q06945 KRT18P38-201ENST00000449496 1282 ntBASIC20.32■□□□□ 0.84
SOX4Q06945 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.32■□□□□ 0.84
SOX4Q06945 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.32■□□□□ 0.84
SOX4Q06945 AC140113.3-201ENST00000605663 199 ntBASIC20.32■□□□□ 0.84
SOX4Q06945 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.32■□□□□ 0.84
SOX4Q06945 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SOX4Q06945 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SOX4Q06945 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
SOX4Q06945 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.32■□□□□ 0.84
SOX4Q06945 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SOX4Q06945 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.31■□□□□ 0.84
SOX4Q06945 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SOX4Q06945 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.31■□□□□ 0.84
SOX4Q06945 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SOX4Q06945 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SOX4Q06945 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SOX4Q06945 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.31■□□□□ 0.84
SOX4Q06945 AL031133.1-201ENST00000406807 723 ntBASIC20.31■□□□□ 0.84
SOX4Q06945 AL359075.1-203ENST00000462729 1002 ntBASIC20.31■□□□□ 0.84
SOX4Q06945 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.31■□□□□ 0.84
SOX4Q06945 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SOX4Q06945 GCSHP2-201ENST00000560971 527 ntBASIC20.31■□□□□ 0.84
SOX4Q06945 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC20.31■□□□□ 0.84
SOX4Q06945 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.31■□□□□ 0.84
SOX4Q06945 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
SOX4Q06945 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
SOX4Q06945 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.31■□□□□ 0.84
SOX4Q06945 AL031432.5-201ENST00000641059 760 ntBASIC20.31■□□□□ 0.84
SOX4Q06945 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SOX4Q06945 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SOX4Q06945 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SOX4Q06945 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SOX4Q06945 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SOX4Q06945 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
SOX4Q06945 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SOX4Q06945 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SOX4Q06945 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.31■□□□□ 0.84
SOX4Q06945 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC20.31■□□□□ 0.84
SOX4Q06945 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SOX4Q06945 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SOX4Q06945 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SOX4Q06945 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SOX4Q06945 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SOX4Q06945 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SOX4Q06945 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.3■□□□□ 0.84
SOX4Q06945 NEK4P2-201ENST00000580004 1012 ntBASIC20.3■□□□□ 0.84
SOX4Q06945 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SOX4Q06945 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SOX4Q06945 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SOX4Q06945 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SOX4Q06945 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20.3■□□□□ 0.84
SOX4Q06945 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SOX4Q06945 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
SOX4Q06945 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SOX4Q06945 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SOX4Q06945 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.29■□□□□ 0.84
SOX4Q06945 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SOX4Q06945 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
SOX4Q06945 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SOX4Q06945 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.29■□□□□ 0.84
SOX4Q06945 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SOX4Q06945 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
SOX4Q06945 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.29■□□□□ 0.84
SOX4Q06945 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.29■□□□□ 0.84
SOX4Q06945 AC092647.4-201ENST00000457211 535 ntBASIC20.29■□□□□ 0.84
SOX4Q06945 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SOX4Q06945 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.29■□□□□ 0.84
SOX4Q06945 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SOX4Q06945 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.29■□□□□ 0.84
SOX4Q06945 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SOX4Q06945 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
SOX4Q06945 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.29■□□□□ 0.84
SOX4Q06945 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SOX4Q06945 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SOX4Q06945 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.29■□□□□ 0.84
SOX4Q06945 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SOX4Q06945 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SOX4Q06945 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SOX4Q06945 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.28■□□□□ 0.84
SOX4Q06945 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.28■□□□□ 0.84
SOX4Q06945 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SOX4Q06945 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.28■□□□□ 0.84
SOX4Q06945 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SOX4Q06945 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
SOX4Q06945 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SOX4Q06945 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.28■□□□□ 0.84
SOX4Q06945 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.28■□□□□ 0.84
SOX4Q06945 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms