Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.43■□□□□ 0.54
HNF4AP41235 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
HNF4AP41235 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 NIFKP9-201ENST00000419265 221 ntBASIC18.43■□□□□ 0.54
HNF4AP41235 AL353807.1-201ENST00000427475 662 ntBASIC18.43■□□□□ 0.54
HNF4AP41235 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
HNF4AP41235 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.43■□□□□ 0.54
HNF4AP41235 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.43■□□□□ 0.54
HNF4AP41235 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.43■□□□□ 0.54
HNF4AP41235 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.43■□□□□ 0.54
HNF4AP41235 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.43■□□□□ 0.54
HNF4AP41235 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 CR392000.1-201ENST00000624770 1228 ntBASIC18.43■□□□□ 0.54
HNF4AP41235 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.43■□□□□ 0.54
HNF4AP41235 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.43■□□□□ 0.54
HNF4AP41235 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.43■□□□□ 0.54
HNF4AP41235 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
HNF4AP41235 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.43■□□□□ 0.54
HNF4AP41235 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HNF4AP41235 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.42■□□□□ 0.54
HNF4AP41235 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HNF4AP41235 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
HNF4AP41235 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HNF4AP41235 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HNF4AP41235 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HNF4AP41235 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HNF4AP41235 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
HNF4AP41235 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
HNF4AP41235 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.42■□□□□ 0.54
HNF4AP41235 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.42■□□□□ 0.54
HNF4AP41235 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HNF4AP41235 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.42■□□□□ 0.54
HNF4AP41235 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.42■□□□□ 0.54
HNF4AP41235 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
HNF4AP41235 AC131212.4-201ENST00000623606 975 ntBASIC18.42■□□□□ 0.54
HNF4AP41235 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.42■□□□□ 0.54
HNF4AP41235 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HNF4AP41235 KRT8P41-201ENST00000533985 1514 ntBASIC18.42■□□□□ 0.54
HNF4AP41235 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HNF4AP41235 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HNF4AP41235 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
HNF4AP41235 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.42■□□□□ 0.54
HNF4AP41235 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.42■□□□□ 0.54
HNF4AP41235 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HNF4AP41235 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
HNF4AP41235 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HNF4AP41235 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HNF4AP41235 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HNF4AP41235 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
HNF4AP41235 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HNF4AP41235 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HNF4AP41235 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HNF4AP41235 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HNF4AP41235 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HNF4AP41235 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
HNF4AP41235 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HNF4AP41235 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.41■□□□□ 0.54
HNF4AP41235 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HNF4AP41235 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.41■□□□□ 0.54
HNF4AP41235 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
HNF4AP41235 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.41■□□□□ 0.54
HNF4AP41235 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HNF4AP41235 KSR1P1-201ENST00000446298 240 ntBASIC18.41■□□□□ 0.54
HNF4AP41235 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HNF4AP41235 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HNF4AP41235 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.41■□□□□ 0.54
HNF4AP41235 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.41■□□□□ 0.54
HNF4AP41235 Z99916.2-201ENST00000604037 246 ntBASIC18.41■□□□□ 0.54
HNF4AP41235 AC006333.2-201ENST00000607957 2099 ntBASIC18.41■□□□□ 0.54
HNF4AP41235 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
HNF4AP41235 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HNF4AP41235 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
HNF4AP41235 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.41■□□□□ 0.54
HNF4AP41235 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HNF4AP41235 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HNF4AP41235 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HNF4AP41235 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.41■□□□□ 0.54
HNF4AP41235 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.41■□□□□ 0.54
HNF4AP41235 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HNF4AP41235 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HNF4AP41235 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HNF4AP41235 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.4■□□□□ 0.54
HNF4AP41235 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.4■□□□□ 0.54
HNF4AP41235 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.4■□□□□ 0.54
HNF4AP41235 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HNF4AP41235 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HNF4AP41235 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HNF4AP41235 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.4■□□□□ 0.54
HNF4AP41235 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HNF4AP41235 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms