Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX2P35548 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
MSX2P35548 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX2P35548 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX2P35548 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX2P35548 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MSX2P35548 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.14■□□□□ 0.49
MSX2P35548 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.14■□□□□ 0.49
MSX2P35548 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.14■□□□□ 0.49
MSX2P35548 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
MSX2P35548 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX2P35548 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
MSX2P35548 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.14■□□□□ 0.49
MSX2P35548 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX2P35548 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
MSX2P35548 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
MSX2P35548 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX2P35548 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
MSX2P35548 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
MSX2P35548 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX2P35548 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.13■□□□□ 0.49
MSX2P35548 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.13■□□□□ 0.49
MSX2P35548 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSX2P35548 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.13■□□□□ 0.49
MSX2P35548 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSX2P35548 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSX2P35548 FEM1AP3-201ENST00000403722 1741 ntBASIC18.13■□□□□ 0.49
MSX2P35548 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
MSX2P35548 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSX2P35548 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSX2P35548 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.13■□□□□ 0.49
MSX2P35548 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.13■□□□□ 0.49
MSX2P35548 NTF6G-201ENST00000591094 616 ntBASIC18.13■□□□□ 0.49
MSX2P35548 AL589743.5-201ENST00000616611 1050 ntBASIC18.13■□□□□ 0.49
MSX2P35548 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.13■□□□□ 0.49
MSX2P35548 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
MSX2P35548 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSX2P35548 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
MSX2P35548 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSX2P35548 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSX2P35548 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
MSX2P35548 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSX2P35548 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.13■□□□□ 0.49
MSX2P35548 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSX2P35548 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSX2P35548 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSX2P35548 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSX2P35548 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.13■□□□□ 0.49
MSX2P35548 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.13■□□□□ 0.49
MSX2P35548 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
MSX2P35548 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
MSX2P35548 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.12■□□□□ 0.49
MSX2P35548 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.12■□□□□ 0.49
MSX2P35548 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSX2P35548 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSX2P35548 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSX2P35548 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MSX2P35548 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.12■□□□□ 0.49
MSX2P35548 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSX2P35548 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.12■□□□□ 0.49
MSX2P35548 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.12■□□□□ 0.49
MSX2P35548 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
MSX2P35548 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSX2P35548 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.12■□□□□ 0.49
MSX2P35548 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC18.12■□□□□ 0.49
MSX2P35548 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSX2P35548 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSX2P35548 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
MSX2P35548 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
MSX2P35548 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.12■□□□□ 0.49
MSX2P35548 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSX2P35548 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSX2P35548 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSX2P35548 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MSX2P35548 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSX2P35548 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.11■□□□□ 0.49
MSX2P35548 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MSX2P35548 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
MSX2P35548 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSX2P35548 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSX2P35548 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSX2P35548 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSX2P35548 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
MSX2P35548 AC099398.1-201ENST00000567919 2776 ntBASIC18.11■□□□□ 0.49
MSX2P35548 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.11■□□□□ 0.49
MSX2P35548 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.11■□□□□ 0.49
MSX2P35548 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSX2P35548 DUX4L16-201ENST00000555130 1264 ntBASIC18.11■□□□□ 0.49
MSX2P35548 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.11■□□□□ 0.49
MSX2P35548 AC011767.1-201ENST00000617410 1153 ntBASIC18.11■□□□□ 0.49
MSX2P35548 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MSX2P35548 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.11■□□□□ 0.49
MSX2P35548 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSX2P35548 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.11■□□□□ 0.49
MSX2P35548 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
MSX2P35548 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MSX2P35548 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSX2P35548 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.11■□□□□ 0.49
MSX2P35548 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSX2P35548 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms