Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.62■□□□□ 0.57
SHMT2P34897 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHMT2P34897 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.62■□□□□ 0.57
SHMT2P34897 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SHMT2P34897 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHMT2P34897 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHMT2P34897 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHMT2P34897 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHMT2P34897 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
SHMT2P34897 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SHMT2P34897 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.61■□□□□ 0.57
SHMT2P34897 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.61■□□□□ 0.57
SHMT2P34897 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHMT2P34897 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHMT2P34897 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHMT2P34897 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.61■□□□□ 0.57
SHMT2P34897 AC079598.2-202ENST00000546624 1451 ntBASIC18.61■□□□□ 0.57
SHMT2P34897 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHMT2P34897 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHMT2P34897 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHMT2P34897 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.61■□□□□ 0.57
SHMT2P34897 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.61■□□□□ 0.57
SHMT2P34897 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SHMT2P34897 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.61■□□□□ 0.57
SHMT2P34897 AP000525.1-201ENST00000608286 694 ntBASIC18.61■□□□□ 0.57
SHMT2P34897 AC073912.3-201ENST00000624414 853 ntBASIC18.61■□□□□ 0.57
SHMT2P34897 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHMT2P34897 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHMT2P34897 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHMT2P34897 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.6■□□□□ 0.57
SHMT2P34897 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHMT2P34897 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHMT2P34897 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHMT2P34897 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.6■□□□□ 0.57
SHMT2P34897 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHMT2P34897 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.6■□□□□ 0.57
SHMT2P34897 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHMT2P34897 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHMT2P34897 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SHMT2P34897 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.6■□□□□ 0.57
SHMT2P34897 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHMT2P34897 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHMT2P34897 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHMT2P34897 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHMT2P34897 AC008040.2-201ENST00000461049 708 ntBASIC18.6■□□□□ 0.57
SHMT2P34897 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHMT2P34897 AC097488.1-201ENST00000507834 756 ntBASIC18.6■□□□□ 0.57
SHMT2P34897 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHMT2P34897 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
SHMT2P34897 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
SHMT2P34897 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHMT2P34897 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
SHMT2P34897 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SHMT2P34897 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SHMT2P34897 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
SHMT2P34897 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHMT2P34897 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHMT2P34897 SDHAP1-207ENST00000440850 2000 ntBASIC18.59■□□□□ 0.57
SHMT2P34897 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.59■□□□□ 0.57
SHMT2P34897 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHMT2P34897 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHMT2P34897 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHMT2P34897 MMP23A-201ENST00000234610 1017 ntBASIC18.59■□□□□ 0.57
SHMT2P34897 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHMT2P34897 MIR1238-201ENST00000408483 83 ntBASIC18.59■□□□□ 0.57
SHMT2P34897 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.59■□□□□ 0.57
SHMT2P34897 FITM1-202ENST00000559294 800 ntBASIC18.59■□□□□ 0.57
SHMT2P34897 SLC25A1P4-201ENST00000567977 778 ntBASIC18.59■□□□□ 0.57
SHMT2P34897 AP005242.2-201ENST00000580065 1175 ntBASIC18.59■□□□□ 0.57
SHMT2P34897 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.59■□□□□ 0.57
SHMT2P34897 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
SHMT2P34897 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.59■□□□□ 0.57
SHMT2P34897 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHMT2P34897 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHMT2P34897 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHMT2P34897 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHMT2P34897 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SHMT2P34897 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.59■□□□□ 0.57
SHMT2P34897 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHMT2P34897 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHMT2P34897 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHMT2P34897 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHMT2P34897 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHMT2P34897 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHMT2P34897 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.58■□□□□ 0.57
SHMT2P34897 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHMT2P34897 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHMT2P34897 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHMT2P34897 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHMT2P34897 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHMT2P34897 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHMT2P34897 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.58■□□□□ 0.56
SHMT2P34897 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.58■□□□□ 0.56
SHMT2P34897 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHMT2P34897 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.58■□□□□ 0.56
SHMT2P34897 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.58■□□□□ 0.56
SHMT2P34897 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.58■□□□□ 0.56
SHMT2P34897 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.58■□□□□ 0.56
SHMT2P34897 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHMT2P34897 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms