Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TERF1P1-201ENST00000311003 1181 ntBASIC17.41■□□□□ 0.38
MSX1P28360 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSX1P28360 AL137013.1-201ENST00000432946 1228 ntBASIC17.41■□□□□ 0.38
MSX1P28360 TSPY23P-201ENST00000440136 739 ntBASIC17.41■□□□□ 0.38
MSX1P28360 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
MSX1P28360 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MSX1P28360 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
MSX1P28360 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.41■□□□□ 0.38
MSX1P28360 AC010947.1-201ENST00000623454 693 ntBASIC17.41■□□□□ 0.38
MSX1P28360 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.41■□□□□ 0.38
MSX1P28360 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSX1P28360 CYP2D8P-201ENST00000433633 1490 ntBASIC17.41■□□□□ 0.38
MSX1P28360 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
MSX1P28360 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSX1P28360 TEX21P-204ENST00000641479 1693 ntBASIC17.41■□□□□ 0.38
MSX1P28360 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MSX1P28360 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
MSX1P28360 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSX1P28360 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSX1P28360 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.4■□□□□ 0.38
MSX1P28360 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSX1P28360 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.4■□□□□ 0.38
MSX1P28360 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.4■□□□□ 0.38
MSX1P28360 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.4■□□□□ 0.38
MSX1P28360 SLC25A3P1-201ENST00000443844 931 ntBASIC17.4■□□□□ 0.38
MSX1P28360 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.4■□□□□ 0.38
MSX1P28360 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
MSX1P28360 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.4■□□□□ 0.38
MSX1P28360 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.4■□□□□ 0.38
MSX1P28360 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.4■□□□□ 0.38
MSX1P28360 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.4■□□□□ 0.38
MSX1P28360 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.4■□□□□ 0.38
MSX1P28360 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.4■□□□□ 0.38
MSX1P28360 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
MSX1P28360 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MSX1P28360 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSX1P28360 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSX1P28360 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.4■□□□□ 0.38
MSX1P28360 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSX1P28360 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSX1P28360 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MSX1P28360 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.4■□□□□ 0.38
MSX1P28360 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.4■□□□□ 0.38
MSX1P28360 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
MSX1P28360 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
MSX1P28360 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.39■□□□□ 0.38
MSX1P28360 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
MSX1P28360 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
MSX1P28360 KRT8P11-201ENST00000409686 1436 ntBASIC17.39■□□□□ 0.38
MSX1P28360 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
MSX1P28360 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
MSX1P28360 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX1P28360 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.39■□□□□ 0.37
MSX1P28360 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.39■□□□□ 0.37
MSX1P28360 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX1P28360 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
MSX1P28360 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
MSX1P28360 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MSX1P28360 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC17.39■□□□□ 0.37
MSX1P28360 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.39■□□□□ 0.37
MSX1P28360 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX1P28360 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX1P28360 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX1P28360 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX1P28360 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
MSX1P28360 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.39■□□□□ 0.37
MSX1P28360 AC008040.2-201ENST00000461049 708 ntBASIC17.39■□□□□ 0.37
MSX1P28360 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.39■□□□□ 0.37
MSX1P28360 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MSX1P28360 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX1P28360 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.39■□□□□ 0.37
MSX1P28360 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX1P28360 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX1P28360 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MSX1P28360 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.39■□□□□ 0.37
MSX1P28360 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX1P28360 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MSX1P28360 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.39■□□□□ 0.37
MSX1P28360 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.39■□□□□ 0.37
MSX1P28360 AC096733.2-201ENST00000609937 1394 ntBASIC17.39■□□□□ 0.37
MSX1P28360 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.39■□□□□ 0.37
MSX1P28360 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.39■□□□□ 0.37
MSX1P28360 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSX1P28360 AC073508.3-201ENST00000619697 1419 ntBASIC17.38■□□□□ 0.37
MSX1P28360 FEM1AP3-201ENST00000403722 1741 ntBASIC17.38■□□□□ 0.37
MSX1P28360 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSX1P28360 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
MSX1P28360 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSX1P28360 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MSX1P28360 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
MSX1P28360 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.38■□□□□ 0.37
MSX1P28360 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MSX1P28360 AC097488.1-201ENST00000507834 756 ntBASIC17.38■□□□□ 0.37
MSX1P28360 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.38■□□□□ 0.37
MSX1P28360 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.38■□□□□ 0.37
MSX1P28360 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.38■□□□□ 0.37
MSX1P28360 CKBP1-201ENST00000565489 1086 ntBASIC17.38■□□□□ 0.37
MSX1P28360 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSX1P28360 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.38■□□□□ 0.37
MSX1P28360 FP475955.4-201ENST00000623131 1990 ntBASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms