Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL8A1P27658 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC16.59■□□□□ 0.25
COL8A1P27658 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL8A1P27658 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC16.59■□□□□ 0.25
COL8A1P27658 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
COL8A1P27658 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL8A1P27658 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL8A1P27658 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC16.59■□□□□ 0.25
COL8A1P27658 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL8A1P27658 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL8A1P27658 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC16.59■□□□□ 0.25
COL8A1P27658 FP700111.2-201ENST00000619190 1892 ntBASIC16.59■□□□□ 0.25
COL8A1P27658 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.25
COL8A1P27658 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL8A1P27658 AC138932.1-201ENST00000534164 6830 ntBASIC16.58■□□□□ 0.25
COL8A1P27658 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
COL8A1P27658 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL8A1P27658 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL8A1P27658 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL8A1P27658 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.58■□□□□ 0.24
COL8A1P27658 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.58■□□□□ 0.24
COL8A1P27658 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.58■□□□□ 0.24
COL8A1P27658 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.58■□□□□ 0.24
COL8A1P27658 AC104819.1-201ENST00000504587 486 ntBASIC16.58■□□□□ 0.24
COL8A1P27658 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.58■□□□□ 0.24
COL8A1P27658 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.58■□□□□ 0.24
COL8A1P27658 AL355385.1-201ENST00000606123 409 ntBASIC16.58■□□□□ 0.24
COL8A1P27658 AC079602.3-201ENST00000623931 403 ntBASIC16.58■□□□□ 0.24
COL8A1P27658 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.58■□□□□ 0.24
COL8A1P27658 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.58■□□□□ 0.24
COL8A1P27658 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL8A1P27658 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL8A1P27658 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL8A1P27658 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL8A1P27658 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
COL8A1P27658 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL8A1P27658 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL8A1P27658 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL8A1P27658 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC16.58■□□□□ 0.24
COL8A1P27658 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
COL8A1P27658 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL8A1P27658 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL8A1P27658 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL8A1P27658 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
COL8A1P27658 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL8A1P27658 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL8A1P27658 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC16.57■□□□□ 0.24
COL8A1P27658 AC093525.10-201ENST00000625130 1569 ntBASIC16.57■□□□□ 0.24
COL8A1P27658 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC16.57■□□□□ 0.24
COL8A1P27658 KRT8P11-201ENST00000409686 1436 ntBASIC16.57■□□□□ 0.24
COL8A1P27658 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL8A1P27658 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.57■□□□□ 0.24
COL8A1P27658 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
COL8A1P27658 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL8A1P27658 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL8A1P27658 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.57■□□□□ 0.24
COL8A1P27658 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC16.57■□□□□ 0.24
COL8A1P27658 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.57■□□□□ 0.24
COL8A1P27658 KRT18P58-201ENST00000527480 1120 ntBASIC16.57■□□□□ 0.24
COL8A1P27658 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.57■□□□□ 0.24
COL8A1P27658 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.57■□□□□ 0.24
COL8A1P27658 AP001005.1-201ENST00000571755 1248 ntBASIC16.57■□□□□ 0.24
COL8A1P27658 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.57■□□□□ 0.24
COL8A1P27658 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.57■□□□□ 0.24
COL8A1P27658 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.57■□□□□ 0.24
COL8A1P27658 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
COL8A1P27658 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
COL8A1P27658 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL8A1P27658 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
COL8A1P27658 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC16.57■□□□□ 0.24
COL8A1P27658 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL8A1P27658 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC16.56■□□□□ 0.24
COL8A1P27658 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL8A1P27658 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL8A1P27658 CD37-204ENST00000535669 1674 ntTSL 2 BASIC16.56■□□□□ 0.24
COL8A1P27658 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL8A1P27658 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
COL8A1P27658 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL8A1P27658 LINC00167-201ENST00000530583 1419 ntBASIC16.56■□□□□ 0.24
COL8A1P27658 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL8A1P27658 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL8A1P27658 AKR1C7P-201ENST00000305623 895 ntBASIC16.56■□□□□ 0.24
COL8A1P27658 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.56■□□□□ 0.24
COL8A1P27658 AC074051.2-201ENST00000565115 352 ntBASIC16.56■□□□□ 0.24
COL8A1P27658 RNF126P1-202ENST00000569893 925 ntBASIC16.56■□□□□ 0.24
COL8A1P27658 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.56■□□□□ 0.24
COL8A1P27658 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL8A1P27658 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.56■□□□□ 0.24
COL8A1P27658 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
COL8A1P27658 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL8A1P27658 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC16.56■□□□□ 0.24
COL8A1P27658 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL8A1P27658 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL8A1P27658 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL8A1P27658 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL8A1P27658 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL8A1P27658 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL8A1P27658 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
COL8A1P27658 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC16.55■□□□□ 0.24
COL8A1P27658 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms