Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC15.3■□□□□ 0.04
HMGB3O15347 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC15.3■□□□□ 0.04
HMGB3O15347 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC15.3■□□□□ 0.04
HMGB3O15347 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 CDV3P1-201ENST00000471403 739 ntBASIC15.3■□□□□ 0.04
HMGB3O15347 PBX2P1-201ENST00000493219 1291 ntBASIC15.3■□□□□ 0.04
HMGB3O15347 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC15.3■□□□□ 0.04
HMGB3O15347 AC126755.1-201ENST00000525846 6405 ntBASIC15.3■□□□□ 0.04
HMGB3O15347 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC15.3■□□□□ 0.04
HMGB3O15347 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC15.3■□□□□ 0.04
HMGB3O15347 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC15.3■□□□□ 0.04
HMGB3O15347 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC15.3■□□□□ 0.04
HMGB3O15347 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC15.3■□□□□ 0.04
HMGB3O15347 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC15.3■□□□□ 0.04
HMGB3O15347 AP000997.3-201ENST00000623333 2250 ntBASIC15.3■□□□□ 0.04
HMGB3O15347 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC15.3■□□□□ 0.04
HMGB3O15347 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HMGB3O15347 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB3O15347 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGB3O15347 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB3O15347 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGB3O15347 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB3O15347 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC15.29■□□□□ 0.04
HMGB3O15347 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
HMGB3O15347 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGB3O15347 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
HMGB3O15347 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB3O15347 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGB3O15347 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB3O15347 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
HMGB3O15347 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB3O15347 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB3O15347 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGB3O15347 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
HMGB3O15347 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC15.29■□□□□ 0.04
HMGB3O15347 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB3O15347 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
HMGB3O15347 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC15.29■□□□□ 0.04
HMGB3O15347 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC15.29■□□□□ 0.04
HMGB3O15347 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC15.29■□□□□ 0.04
HMGB3O15347 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB3O15347 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB3O15347 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB3O15347 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB3O15347 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB3O15347 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGB3O15347 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC15.29■□□□□ 0.04
HMGB3O15347 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.29■□□□□ 0.04
HMGB3O15347 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC15.29■□□□□ 0.04
HMGB3O15347 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB3O15347 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB3O15347 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HMGB3O15347 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB3O15347 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
HMGB3O15347 TEX21P-204ENST00000641479 1693 ntBASIC15.28■□□□□ 0.04
HMGB3O15347 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
HMGB3O15347 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB3O15347 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB3O15347 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB3O15347 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HMGB3O15347 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB3O15347 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
HMGB3O15347 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC15.28■□□□□ 0.04
HMGB3O15347 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
HMGB3O15347 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB3O15347 AC087633.2-202ENST00000565166 1439 ntBASIC15.28■□□□□ 0.04
HMGB3O15347 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB3O15347 RASA4CP-201ENST00000424092 1398 ntBASIC15.28■□□□□ 0.04
HMGB3O15347 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB3O15347 SAPCD2P1-201ENST00000395413 1184 ntBASIC15.28■□□□□ 0.04
HMGB3O15347 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC15.28■□□□□ 0.04
HMGB3O15347 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC15.28■□□□□ 0.04
HMGB3O15347 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB3O15347 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC15.28■□□□□ 0.04
HMGB3O15347 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC15.28■□□□□ 0.04
HMGB3O15347 CCDC92B-201ENST00000575506 885 ntBASIC15.28■□□□□ 0.04
HMGB3O15347 AC243732.1-201ENST00000612648 864 ntBASIC15.28■□□□□ 0.04
HMGB3O15347 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB3O15347 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HMGB3O15347 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms