Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP1O15259 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP1O15259 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NPHP1O15259 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC23.92■■□□□ 1.42
NPHP1O15259 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP1O15259 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP1O15259 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP1O15259 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP1O15259 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
NPHP1O15259 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC23.91■■□□□ 1.42
NPHP1O15259 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP1O15259 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP1O15259 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP1O15259 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC23.91■■□□□ 1.42
NPHP1O15259 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
NPHP1O15259 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP1O15259 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP1O15259 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP1O15259 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC23.91■■□□□ 1.42
NPHP1O15259 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP1O15259 AP005212.1-201ENST00000581547 1997 ntBASIC23.91■■□□□ 1.42
NPHP1O15259 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP1O15259 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP1O15259 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NPHP1O15259 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP1O15259 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP1O15259 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC23.9■■□□□ 1.42
NPHP1O15259 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC23.9■■□□□ 1.42
NPHP1O15259 AC073314.1-201ENST00000568729 2216 ntBASIC23.9■■□□□ 1.42
NPHP1O15259 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP1O15259 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC23.9■■□□□ 1.42
NPHP1O15259 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP1O15259 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC23.9■■□□□ 1.42
NPHP1O15259 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP1O15259 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC23.9■■□□□ 1.42
NPHP1O15259 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
NPHP1O15259 AC092329.2-201ENST00000598402 547 ntBASIC23.9■■□□□ 1.42
NPHP1O15259 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC23.9■■□□□ 1.42
NPHP1O15259 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP1O15259 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP1O15259 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP1O15259 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP1O15259 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP1O15259 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC23.9■■□□□ 1.42
NPHP1O15259 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
NPHP1O15259 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NPHP1O15259 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
NPHP1O15259 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
NPHP1O15259 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
NPHP1O15259 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.42
NPHP1O15259 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
NPHP1O15259 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
NPHP1O15259 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
NPHP1O15259 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
NPHP1O15259 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC23.89■■□□□ 1.42
NPHP1O15259 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
NPHP1O15259 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
NPHP1O15259 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
NPHP1O15259 HBZP1-201ENST00000354915 429 ntBASIC23.89■■□□□ 1.41
NPHP1O15259 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
NPHP1O15259 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.41
NPHP1O15259 RASA4DP-201ENST00000460726 1199 ntBASIC23.89■■□□□ 1.41
NPHP1O15259 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
NPHP1O15259 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC23.89■■□□□ 1.41
NPHP1O15259 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
NPHP1O15259 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
NPHP1O15259 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC23.89■■□□□ 1.41
NPHP1O15259 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC23.89■■□□□ 1.41
NPHP1O15259 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
NPHP1O15259 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.41
NPHP1O15259 AL512408.1-201ENST00000569378 2000 ntBASIC23.89■■□□□ 1.41
NPHP1O15259 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC23.89■■□□□ 1.41
NPHP1O15259 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
NPHP1O15259 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.41
NPHP1O15259 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC23.89■■□□□ 1.41
NPHP1O15259 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
NPHP1O15259 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP1O15259 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC23.88■■□□□ 1.41
NPHP1O15259 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP1O15259 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP1O15259 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP1O15259 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP1O15259 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP1O15259 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP1O15259 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC23.88■■□□□ 1.41
NPHP1O15259 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP1O15259 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
NPHP1O15259 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC23.88■■□□□ 1.41
NPHP1O15259 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP1O15259 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC23.88■■□□□ 1.41
NPHP1O15259 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NPHP1O15259 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
NPHP1O15259 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC23.87■■□□□ 1.41
NPHP1O15259 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP1O15259 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC23.87■■□□□ 1.41
NPHP1O15259 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP1O15259 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP1O15259 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC23.87■■□□□ 1.41
NPHP1O15259 AC092597.1-201ENST00000487352 616 ntBASIC23.87■■□□□ 1.41
NPHP1O15259 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms