Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
SLC28A1O00337 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.31■□□□□ 0.52
SLC28A1O00337 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.31■□□□□ 0.52
SLC28A1O00337 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.31■□□□□ 0.52
SLC28A1O00337 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.31■□□□□ 0.52
SLC28A1O00337 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SLC28A1O00337 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.31■□□□□ 0.52
SLC28A1O00337 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
SLC28A1O00337 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SLC28A1O00337 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SLC28A1O00337 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SLC28A1O00337 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SLC28A1O00337 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.31■□□□□ 0.52
SLC28A1O00337 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SLC28A1O00337 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SLC28A1O00337 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SLC28A1O00337 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SLC28A1O00337 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SLC28A1O00337 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.31■□□□□ 0.52
SLC28A1O00337 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SLC28A1O00337 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SLC28A1O00337 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
SLC28A1O00337 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SLC28A1O00337 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SLC28A1O00337 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.3■□□□□ 0.52
SLC28A1O00337 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
SLC28A1O00337 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
SLC28A1O00337 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC28A1O00337 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.3■□□□□ 0.52
SLC28A1O00337 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC28A1O00337 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
SLC28A1O00337 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SLC28A1O00337 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC28A1O00337 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.3■□□□□ 0.52
SLC28A1O00337 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.3■□□□□ 0.52
SLC28A1O00337 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.3■□□□□ 0.52
SLC28A1O00337 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.3■□□□□ 0.52
SLC28A1O00337 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC28A1O00337 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.3■□□□□ 0.52
SLC28A1O00337 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.3■□□□□ 0.52
SLC28A1O00337 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC28A1O00337 BCL2-203ENST00000589955 5011 ntBASIC18.3■□□□□ 0.52
SLC28A1O00337 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SLC28A1O00337 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC28A1O00337 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC28A1O00337 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
SLC28A1O00337 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SLC28A1O00337 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
SLC28A1O00337 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SLC28A1O00337 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
SLC28A1O00337 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SLC28A1O00337 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SLC28A1O00337 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SLC28A1O00337 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.29■□□□□ 0.52
SLC28A1O00337 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.29■□□□□ 0.52
SLC28A1O00337 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SLC28A1O00337 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SLC28A1O00337 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.29■□□□□ 0.52
SLC28A1O00337 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.29■□□□□ 0.52
SLC28A1O00337 HLA-L-209ENST00000420110 1011 ntBASIC18.29■□□□□ 0.52
SLC28A1O00337 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.29■□□□□ 0.52
SLC28A1O00337 AC026366.1-201ENST00000488803 879 ntBASIC18.29■□□□□ 0.52
SLC28A1O00337 RNA5SP413-201ENST00000516373 109 ntBASIC18.29■□□□□ 0.52
SLC28A1O00337 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.29■□□□□ 0.52
SLC28A1O00337 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SLC28A1O00337 AC069544.1-201ENST00000609399 999 ntBASIC18.29■□□□□ 0.52
SLC28A1O00337 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SLC28A1O00337 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SLC28A1O00337 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SLC28A1O00337 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.29■□□□□ 0.52
SLC28A1O00337 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SLC28A1O00337 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
SLC28A1O00337 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.29■□□□□ 0.52
SLC28A1O00337 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SLC28A1O00337 AC009113.1-201ENST00000570267 2443 ntBASIC18.29■□□□□ 0.52
SLC28A1O00337 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SLC28A1O00337 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.28■□□□□ 0.52
SLC28A1O00337 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SLC28A1O00337 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.28■□□□□ 0.52
SLC28A1O00337 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.28■□□□□ 0.52
SLC28A1O00337 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SLC28A1O00337 AC079598.2-202ENST00000546624 1451 ntBASIC18.28■□□□□ 0.52
SLC28A1O00337 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SLC28A1O00337 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SLC28A1O00337 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SLC28A1O00337 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SLC28A1O00337 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SLC28A1O00337 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SLC28A1O00337 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.28■□□□□ 0.52
SLC28A1O00337 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.28■□□□□ 0.52
SLC28A1O00337 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SLC28A1O00337 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.28■□□□□ 0.52
SLC28A1O00337 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SLC28A1O00337 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SLC28A1O00337 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
SLC28A1O00337 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
SLC28A1O00337 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SLC28A1O00337 ANO7L1-203ENST00000602586 1720 ntBASIC18.28■□□□□ 0.52
SLC28A1O00337 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SLC28A1O00337 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms