Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CHMP1AQ9HD42 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 AC104581.1-202ENST00000635932 2618 ntBASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 GPX1P1-201ENST00000388829 606 ntBASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 AC004911.1-201ENST00000416316 871 ntBASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 AC105036.2-201ENST00000569468 176 ntBASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CHMP1AQ9HD42 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 BX276092.2-201ENST00000417668 665 ntBASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
CHMP1AQ9HD42 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 MFF-205ENST00000354503 1085 ntTSL 2 BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 AF201337.1-201ENST00000520239 748 ntBASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 AC009113.1-201ENST00000570267 2443 ntBASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC16.36■□□□□ 0.21
CHMP1AQ9HD42 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CHMP1AQ9HD42 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms