Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIME1Q9H400 IER3-202ENST00000376377 1350 ntBASIC16.71■□□□□ 0.27
LIME1Q9H400 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
LIME1Q9H400 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIME1Q9H400 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIME1Q9H400 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
LIME1Q9H400 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIME1Q9H400 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
LIME1Q9H400 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
LIME1Q9H400 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
LIME1Q9H400 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC16.7■□□□□ 0.26
LIME1Q9H400 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIME1Q9H400 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIME1Q9H400 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIME1Q9H400 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIME1Q9H400 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC16.7■□□□□ 0.26
LIME1Q9H400 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC16.7■□□□□ 0.26
LIME1Q9H400 AC018553.1-201ENST00000616682 1458 ntBASIC16.7■□□□□ 0.26
LIME1Q9H400 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
LIME1Q9H400 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIME1Q9H400 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIME1Q9H400 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIME1Q9H400 AC004951.3-201ENST00000418645 1148 ntBASIC16.7■□□□□ 0.26
LIME1Q9H400 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
LIME1Q9H400 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.7■□□□□ 0.26
LIME1Q9H400 AL450487.1-201ENST00000426799 995 ntBASIC16.7■□□□□ 0.26
LIME1Q9H400 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.7■□□□□ 0.26
LIME1Q9H400 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIME1Q9H400 AL359075.1-203ENST00000462729 1002 ntBASIC16.7■□□□□ 0.26
LIME1Q9H400 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.7■□□□□ 0.26
LIME1Q9H400 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC16.7■□□□□ 0.26
LIME1Q9H400 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIME1Q9H400 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIME1Q9H400 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC16.7■□□□□ 0.26
LIME1Q9H400 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC16.7■□□□□ 0.26
LIME1Q9H400 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIME1Q9H400 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIME1Q9H400 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC16.7■□□□□ 0.26
LIME1Q9H400 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC16.7■□□□□ 0.26
LIME1Q9H400 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIME1Q9H400 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
LIME1Q9H400 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC16.69■□□□□ 0.26
LIME1Q9H400 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC16.69■□□□□ 0.26
LIME1Q9H400 GOLGA6L3-201ENST00000507199 1679 ntBASIC16.69■□□□□ 0.26
LIME1Q9H400 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIME1Q9H400 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIME1Q9H400 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIME1Q9H400 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC16.69■□□□□ 0.26
LIME1Q9H400 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
LIME1Q9H400 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIME1Q9H400 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIME1Q9H400 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIME1Q9H400 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIME1Q9H400 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIME1Q9H400 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.69■□□□□ 0.26
LIME1Q9H400 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIME1Q9H400 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
LIME1Q9H400 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.69■□□□□ 0.26
LIME1Q9H400 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.69■□□□□ 0.26
LIME1Q9H400 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIME1Q9H400 AL121956.5-201ENST00000625261 221 ntBASIC16.69■□□□□ 0.26
LIME1Q9H400 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.69■□□□□ 0.26
LIME1Q9H400 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.69■□□□□ 0.26
LIME1Q9H400 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC16.69■□□□□ 0.26
LIME1Q9H400 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIME1Q9H400 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.69■□□□□ 0.26
LIME1Q9H400 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC16.69■□□□□ 0.26
LIME1Q9H400 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIME1Q9H400 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIME1Q9H400 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIME1Q9H400 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIME1Q9H400 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIME1Q9H400 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIME1Q9H400 CD37-204ENST00000535669 1674 ntTSL 2 BASIC16.69■□□□□ 0.26
LIME1Q9H400 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIME1Q9H400 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
LIME1Q9H400 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
LIME1Q9H400 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIME1Q9H400 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC16.68■□□□□ 0.26
LIME1Q9H400 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIME1Q9H400 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LIME1Q9H400 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIME1Q9H400 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
LIME1Q9H400 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
LIME1Q9H400 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
LIME1Q9H400 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIME1Q9H400 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LIME1Q9H400 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LIME1Q9H400 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.68■□□□□ 0.26
LIME1Q9H400 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.68■□□□□ 0.26
LIME1Q9H400 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.68■□□□□ 0.26
LIME1Q9H400 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.68■□□□□ 0.26
LIME1Q9H400 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.68■□□□□ 0.26
LIME1Q9H400 HLA-A-209ENST00000638375 975 ntBASIC16.68■□□□□ 0.26
LIME1Q9H400 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LIME1Q9H400 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LIME1Q9H400 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.68■□□□□ 0.26
LIME1Q9H400 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.68■□□□□ 0.26
LIME1Q9H400 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC16.68■□□□□ 0.26
LIME1Q9H400 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms