Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.32■□□□□ 0.68
COL25A1Q9BXS0 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 BAD-202ENST00000394531 631 ntTSL 3 BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 AC011840.4-201ENST00000578471 627 ntBASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 AC005336.2-201ENST00000593183 939 ntBASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 AC027612.4-201ENST00000605371 583 ntBASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL25A1Q9BXS0 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL25A1Q9BXS0 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.3■□□□□ 0.68
COL25A1Q9BXS0 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
COL25A1Q9BXS0 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
COL25A1Q9BXS0 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL25A1Q9BXS0 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
COL25A1Q9BXS0 COX5A-206ENST00000568783 571 ntTSL 3 BASIC19.3■□□□□ 0.68
COL25A1Q9BXS0 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.3■□□□□ 0.68
COL25A1Q9BXS0 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
COL25A1Q9BXS0 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
COL25A1Q9BXS0 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL25A1Q9BXS0 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL25A1Q9BXS0 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
COL25A1Q9BXS0 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.29■□□□□ 0.68
COL25A1Q9BXS0 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.29■□□□□ 0.68
COL25A1Q9BXS0 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.29■□□□□ 0.68
COL25A1Q9BXS0 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC19.29■□□□□ 0.68
COL25A1Q9BXS0 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC19.29■□□□□ 0.68
COL25A1Q9BXS0 AC005498.2-205ENST00000593218 784 ntBASIC19.29■□□□□ 0.68
COL25A1Q9BXS0 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.29■□□□□ 0.68
COL25A1Q9BXS0 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL25A1Q9BXS0 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC19.29■□□□□ 0.68
COL25A1Q9BXS0 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL25A1Q9BXS0 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL25A1Q9BXS0 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL25A1Q9BXS0 PHGDH-210ENST00000641115 1638 ntBASIC19.29■□□□□ 0.68
COL25A1Q9BXS0 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 GPAT2P1-201ENST00000444924 1672 ntBASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 OR7E14P-202ENST00000530490 1290 ntBASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.28■□□□□ 0.68
COL25A1Q9BXS0 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.27■□□□□ 0.68
COL25A1Q9BXS0 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL25A1Q9BXS0 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
COL25A1Q9BXS0 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.27■□□□□ 0.68
COL25A1Q9BXS0 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.27■□□□□ 0.68
COL25A1Q9BXS0 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL25A1Q9BXS0 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL25A1Q9BXS0 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL25A1Q9BXS0 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
COL25A1Q9BXS0 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
COL25A1Q9BXS0 TSEN15P1-201ENST00000423257 515 ntBASIC19.27■□□□□ 0.68
COL25A1Q9BXS0 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC19.27■□□□□ 0.68
COL25A1Q9BXS0 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL25A1Q9BXS0 NOP2-220ENST00000545915 630 ntTSL 2 BASIC19.27■□□□□ 0.68
COL25A1Q9BXS0 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL25A1Q9BXS0 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.27■□□□□ 0.68
COL25A1Q9BXS0 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.27■□□□□ 0.68
COL25A1Q9BXS0 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC19.27■□□□□ 0.68
COL25A1Q9BXS0 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms