Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
PTCHD1Q96NR3 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
PTCHD1Q96NR3 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 AC005332.7-201ENST00000614046 2005 ntBASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 RNF165-205ENST00000588679 2904 ntBASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 PRSS44-201ENST00000515154 1146 ntBASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 C2orf69P3-201ENST00000565542 1120 ntBASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 CYP2D8P-201ENST00000433633 1490 ntBASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PTCHD1Q96NR3 AC087289.5-201ENST00000586076 3175 ntBASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 ECEL1P3-201ENST00000427961 737 ntBASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 TSPY23P-201ENST00000440136 739 ntBASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.93■□□□□ 0.46
PTCHD1Q96NR3 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 LINC01023-201ENST00000606054 436 ntBASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 AC010947.1-201ENST00000623454 693 ntBASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.92■□□□□ 0.46
PTCHD1Q96NR3 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.91■□□□□ 0.46
PTCHD1Q96NR3 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.91■□□□□ 0.46
PTCHD1Q96NR3 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD1Q96NR3 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD1Q96NR3 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.91■□□□□ 0.46
PTCHD1Q96NR3 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD1Q96NR3 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.91■□□□□ 0.46
PTCHD1Q96NR3 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.91■□□□□ 0.46
PTCHD1Q96NR3 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTCHD1Q96NR3 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms