Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 FSCN1P1-201ENST00000568912 1481 ntBASIC14.75□□□□□ -0.05
CCDC140Q96MF4 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 MIR718-201ENST00000390190 70 ntBASIC14.74□□□□□ -0.05
CCDC140Q96MF4 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC140Q96MF4 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 AC116562.2-201ENST00000507042 360 ntBASIC14.73□□□□□ -0.05
CCDC140Q96MF4 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 DECR2-212ENST00000627716 352 ntTSL 2 BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 AP006294.2-201ENST00000641667 209 ntBASIC14.73□□□□□ -0.05
CCDC140Q96MF4 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC140Q96MF4 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 AC093503.3-201ENST00000624917 2352 ntBASIC14.72□□□□□ -0.05
CCDC140Q96MF4 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 CKBP1-201ENST00000565489 1086 ntBASIC14.72□□□□□ -0.05
CCDC140Q96MF4 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 AP000692.2-201ENST00000608391 879 ntBASIC14.72□□□□□ -0.05
CCDC140Q96MF4 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 AC026471.5-201ENST00000615068 467 ntBASIC14.72□□□□□ -0.05
CCDC140Q96MF4 REXO1L10P-201ENST00000615707 1290 ntBASIC14.72□□□□□ -0.05
CCDC140Q96MF4 REXO1L12P-201ENST00000622156 912 ntBASIC14.72□□□□□ -0.05
CCDC140Q96MF4 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC140Q96MF4 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms