Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HPS3Q969F9 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC21.1■□□□□ 0.97
HPS3Q969F9 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
HPS3Q969F9 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC21.1■□□□□ 0.97
HPS3Q969F9 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HPS3Q969F9 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
HPS3Q969F9 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC21.09■□□□□ 0.97
HPS3Q969F9 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HPS3Q969F9 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC21.09■□□□□ 0.97
HPS3Q969F9 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
HPS3Q969F9 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HPS3Q969F9 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HPS3Q969F9 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC21.09■□□□□ 0.97
HPS3Q969F9 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC21.09■□□□□ 0.97
HPS3Q969F9 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HPS3Q969F9 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HPS3Q969F9 AL031985.4-201ENST00000642138 673 ntBASIC21.09■□□□□ 0.97
HPS3Q969F9 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC21.09■□□□□ 0.97
HPS3Q969F9 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
HPS3Q969F9 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC21.09■□□□□ 0.97
HPS3Q969F9 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
HPS3Q969F9 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HPS3Q969F9 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HPS3Q969F9 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC21.08■□□□□ 0.97
HPS3Q969F9 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.08■□□□□ 0.97
HPS3Q969F9 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.08■□□□□ 0.97
HPS3Q969F9 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HPS3Q969F9 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
HPS3Q969F9 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC21.08■□□□□ 0.97
HPS3Q969F9 DERL1-203ENST00000419562 918 ntTSL 2 BASIC21.08■□□□□ 0.97
HPS3Q969F9 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HPS3Q969F9 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HPS3Q969F9 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC21.08■□□□□ 0.97
HPS3Q969F9 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.08■□□□□ 0.97
HPS3Q969F9 AC011298.2-201ENST00000617989 482 ntBASIC21.08■□□□□ 0.97
HPS3Q969F9 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC21.08■□□□□ 0.97
HPS3Q969F9 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC21.08■□□□□ 0.97
HPS3Q969F9 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
HPS3Q969F9 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HPS3Q969F9 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HPS3Q969F9 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HPS3Q969F9 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HPS3Q969F9 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
HPS3Q969F9 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.07■□□□□ 0.96
HPS3Q969F9 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21.07■□□□□ 0.96
HPS3Q969F9 AC004951.3-201ENST00000418645 1148 ntBASIC21.07■□□□□ 0.96
HPS3Q969F9 B3GAT3P1-201ENST00000471720 806 ntBASIC21.07■□□□□ 0.96
HPS3Q969F9 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
HPS3Q969F9 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
HPS3Q969F9 AC233702.5-201ENST00000584107 538 ntBASIC21.07■□□□□ 0.96
HPS3Q969F9 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
HPS3Q969F9 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC21.07■□□□□ 0.96
HPS3Q969F9 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HPS3Q969F9 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HPS3Q969F9 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.07■□□□□ 0.96
HPS3Q969F9 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
HPS3Q969F9 SRI-203ENST00000419179 1307 ntTSL 2 BASIC21.06■□□□□ 0.96
HPS3Q969F9 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC21.06■□□□□ 0.96
HPS3Q969F9 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC21.06■□□□□ 0.96
HPS3Q969F9 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HPS3Q969F9 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
HPS3Q969F9 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HPS3Q969F9 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HPS3Q969F9 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HPS3Q969F9 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HPS3Q969F9 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
HPS3Q969F9 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC21.06■□□□□ 0.96
HPS3Q969F9 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HPS3Q969F9 GLRB-205ENST00000512619 728 ntTSL 3 BASIC21.06■□□□□ 0.96
HPS3Q969F9 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.06■□□□□ 0.96
HPS3Q969F9 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HPS3Q969F9 MIR6786-201ENST00000616843 113 ntBASIC21.06■□□□□ 0.96
HPS3Q969F9 AC130371.2-201ENST00000619443 611 ntBASIC21.06■□□□□ 0.96
HPS3Q969F9 AL049637.2-201ENST00000641778 930 ntBASIC21.06■□□□□ 0.96
HPS3Q969F9 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
HPS3Q969F9 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HPS3Q969F9 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HPS3Q969F9 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
HPS3Q969F9 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC21.06■□□□□ 0.96
HPS3Q969F9 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.06■□□□□ 0.96
HPS3Q969F9 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HPS3Q969F9 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HPS3Q969F9 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
HPS3Q969F9 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
HPS3Q969F9 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC21.06■□□□□ 0.96
HPS3Q969F9 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HPS3Q969F9 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HPS3Q969F9 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HPS3Q969F9 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HPS3Q969F9 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
HPS3Q969F9 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HPS3Q969F9 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
HPS3Q969F9 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
HPS3Q969F9 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HPS3Q969F9 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC21.05■□□□□ 0.96
HPS3Q969F9 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.05■□□□□ 0.96
HPS3Q969F9 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.05■□□□□ 0.96
HPS3Q969F9 AC008550.1-201ENST00000511500 884 ntBASIC21.05■□□□□ 0.96
HPS3Q969F9 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21.05■□□□□ 0.96
HPS3Q969F9 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms