Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC23.39■■□□□ 1.332e-8■■■■□ 19.3
UPF1Q92900 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 12e-8■■■■□ 19.3
UPF1Q92900 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC20.19■□□□□ 0.822e-8■■■■□ 19.3
UPF1Q92900 LCLAT1-201ENST00000309052 5060 ntTSL 1 (best) BASIC9.75□□□□□ -0.853e-6■■■■□ 19.3
UPF1Q92900 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.443e-6■■■■□ 19.3
UPF1Q92900 WIPF2-203ENST00000494757 2113 ntTSL 1 (best)26.45■■□□□ 1.825e-9■■■□□ 19.2
UPF1Q92900 TMEM55B-205ENST00000554028 1118 ntTSL 212.95□□□□□ -0.343e-7■■■□□ 19.2
UPF1Q92900 TCF3-216ENST00000592395 996 ntTSL 525.46■■□□□ 1.672e-7■■■□□ 19.2
UPF1Q92900 TCF3-217ENST00000592628 1751 ntTSL 519.11■□□□□ 0.652e-7■■■□□ 19.2
UPF1Q92900 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.46■□□□□ 0.222e-7■■■□□ 19.2
UPF1Q92900 TCF3-218ENST00000593064 2694 ntTSL 216.17■□□□□ 0.182e-7■■■□□ 19.2
UPF1Q92900 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.282e-7■■■□□ 19.2
UPF1Q92900 TCF3-220ENST00000611869 4409 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.282e-7■■■□□ 19.2
UPF1Q92900 TCF3-202ENST00000344749 4289 ntTSL 5 BASIC13.08□□□□□ -0.322e-7■■■□□ 19.2
UPF1Q92900 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.071e-7■■■□□ 19.2
UPF1Q92900 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.036e-9■■■□□ 19.2
UPF1Q92900 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC19.93■□□□□ 0.785e-7■■■□□ 19.2
UPF1Q92900 ZNF598-207ENST00000565396 4457 ntTSL 218.83■□□□□ 0.66e-9■■■□□ 19.2
UPF1Q92900 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.586e-9■■■□□ 19.2
UPF1Q92900 ZNF598-203ENST00000562988 3382 ntTSL 518.32■□□□□ 0.526e-9■■■□□ 19.2
UPF1Q92900 RETREG3-205ENST00000586870 1632 ntTSL 224.08■■□□□ 1.454e-11■■■□□ 19.2
UPF1Q92900 TMEM141-204ENST00000483187 683 ntTSL 222.36■■□□□ 1.174e-7■■■□□ 19.2
UPF1Q92900 TMEM141-202ENST00000465017 839 ntTSL 222.36■■□□□ 1.174e-7■■■□□ 19.2
UPF1Q92900 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.864e-7■■■□□ 19.2
UPF1Q92900 COL4A3BP-207ENST00000604926 3355 nt6.34□□□□□ -1.47e-7■■■□□ 19.2
UPF1Q92900 LYZ-203ENST00000549690 669 ntTSL 2 BASIC12.08□□□□□ -0.481e-15■■■□□ 19.2
UPF1Q92900 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.542e-8■■■□□ 19.2
UPF1Q92900 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.592e-8■■■□□ 19.2
UPF1Q92900 CREB3L2-201ENST00000330387 7412 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.82e-7■■■□□ 19.2
UPF1Q92900 CREB3L2-207ENST00000616381 7133 ntTSL 5 BASIC9.32□□□□□ -0.922e-7■■■□□ 19.2
UPF1Q92900 HYOU1-215ENST00000543287 2464 ntTSL 218.06■□□□□ 0.484e-10■■■□□ 19.2
UPF1Q92900 CBL-203ENST00000634586 3457 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.025e-7■■■□□ 19.2
UPF1Q92900 CBL-205ENST00000637974 3030 ntAPPRIS ALT2 TSL 513.82□□□□□ -0.25e-7■■■□□ 19.2
UPF1Q92900 CBL-201ENST00000264033 11231 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.465e-7■■■□□ 19.2
UPF1Q92900 CBL-202ENST00000634301 340 ntTSL 310.62□□□□□ -0.715e-7■■■□□ 19.2
UPF1Q92900 HOXB2-202ENST00000504772 930 ntTSL 322.39■■□□□ 1.173e-8■■■□□ 19.2
UPF1Q92900 RAB35-203ENST00000538903 643 ntTSL 321.68■■□□□ 1.063e-8■■■□□ 19.2
UPF1Q92900 RAB35-205ENST00000543364 578 ntTSL 321.19■□□□□ 0.983e-8■■■□□ 19.2
UPF1Q92900 AC109446.3-201ENST00000567344 641 ntTSL 3 BASIC17.32■□□□□ 0.363e-8■■■□□ 19.2
UPF1Q92900 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.163e-8■■■□□ 19.2
UPF1Q92900 C15orf39-201ENST00000360639 4517 ntAPPRIS P2 TSL 2 BASIC12.8□□□□□ -0.363e-8■■■□□ 19.2
UPF1Q92900 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.393e-8■■■□□ 19.2
UPF1Q92900 RMND5B-210ENST00000515098 4066 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.21e-6■■■□□ 19.2
UPF1Q92900 SREBF1-213ENST00000485080 1230 ntTSL 524.3■■□□□ 1.481e-9■■■□□ 19.2
UPF1Q92900 SREBF1-218ENST00000578469 588 ntTSL 323.07■■□□□ 1.281e-9■■■□□ 19.2
UPF1Q92900 SSR1-206ENST00000479365 1118 ntTSL 5 BASIC10.58□□□□□ -0.728e-18■■■□□ 19.2
UPF1Q92900 MTCH1-205ENST00000471737 629 ntTSL 217.55■□□□□ 0.44e-39■■■□□ 19.2
UPF1Q92900 GPER1-205ENST00000413368 1105 ntTSL 224.43■■□□□ 1.51e-9■■■□□ 19.1
UPF1Q92900 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.211e-9■■■□□ 19.1
UPF1Q92900 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC20.1■□□□□ 0.811e-9■■■□□ 19.1
UPF1Q92900 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.171e-9■■■□□ 19.1
UPF1Q92900 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.111e-9■■■□□ 19.1
UPF1Q92900 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.071e-9■■■□□ 19.1
UPF1Q92900 POR-202ENST00000412064 1044 ntTSL 518.93■□□□□ 0.624e-12■■■□□ 19.1
UPF1Q92900 POR-212ENST00000447222 2332 ntTSL 516.01■□□□□ 0.154e-12■■■□□ 19.1
UPF1Q92900 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC25.66■■□□□ 1.73e-7■■■□□ 19.1
UPF1Q92900 AC011530.1-203ENST00000597712 432 ntTSL 221.92■■□□□ 1.13e-7■■■□□ 19.1
UPF1Q92900 AC011530.1-202ENST00000596586 397 ntAPPRIS P5 TSL 219.57■□□□□ 0.723e-7■■■□□ 19.1
UPF1Q92900 AC011530.1-204ENST00000595946 321 ntAPPRIS ALT2 TSL 219.57■□□□□ 0.723e-7■■■□□ 19.1
UPF1Q92900 ARHGAP35-202ENST00000595822 2977 ntTSL 212.09□□□□□ -0.473e-8■■■□□ 19.1
UPF1Q92900 CMBL-202ENST00000503834 442 ntTSL 39.13□□□□□ -0.954e-11■■■□□ 19.1
UPF1Q92900 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.092e-6■■■□□ 19.1
UPF1Q92900 RIPOR3-201ENST00000045083 4279 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.212e-6■■■□□ 19.1
UPF1Q92900 LPIN1-201ENST00000256720 5384 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.667e-7■■■□□ 19.1
UPF1Q92900 LPIN1-207ENST00000425416 5582 ntTSL 2 BASIC9.51□□□□□ -0.897e-7■■■□□ 19.1
UPF1Q92900 LPIN1-202ENST00000396097 5690 ntTSL 5 BASIC8.54□□□□□ -1.047e-7■■■□□ 19.1
UPF1Q92900 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.453e-6■■■□□ 19.1
UPF1Q92900 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.773e-8■■■□□ 19.1
UPF1Q92900 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.263e-8■■■□□ 19.1
UPF1Q92900 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC24.86■■□□□ 1.575e-9■■■□□ 19.1
UPF1Q92900 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.575e-9■■■□□ 19.1
UPF1Q92900 HMGA1-206ENST00000478214 716 ntTSL 1 (best)21.65■■□□□ 1.061e-22■■■□□ 19.1
UPF1Q92900 ARMC6-205ENST00000535478 762 ntTSL 320■□□□□ 0.792e-8■■■□□ 19.1
UPF1Q92900 NRIP3-205ENST00000534759 567 ntTSL 36.84□□□□□ -1.311e-6■■■□□ 19.1
UPF1Q92900 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.442e-6■■■□□ 19.1
UPF1Q92900 FLCN-201ENST00000285071 3638 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.492e-6■■■□□ 19.1
UPF1Q92900 NBR1-201ENST00000341165 4656 ntAPPRIS P3 TSL 1 (best) BASIC8.12□□□□□ -1.114e-9■■■□□ 19.1
UPF1Q92900 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.248e-7■■■□□ 19.1
UPF1Q92900 MON1B-207ENST00000566455 2864 ntTSL 212.12□□□□□ -0.476e-7■■■□□ 19.1
UPF1Q92900 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.011e-6■■■□□ 19.1
UPF1Q92900 SCAMP5-203ENST00000562212 3400 ntTSL 1 (best) BASIC12.7□□□□□ -0.381e-6■■■□□ 19.1
UPF1Q92900 SCAMP5-201ENST00000361900 3427 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.521e-6■■■□□ 19.1
UPF1Q92900 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.273e-11■■■□□ 19.1
UPF1Q92900 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC28.52■■■□□ 2.162e-11■■■□□ 19.1
UPF1Q92900 PLEKHA2-209ENST00000617275 5582 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.526e-7■■■□□ 19.1
UPF1Q92900 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.983e-7■■■□□ 19.1
UPF1Q92900 COASY-213ENST00000591753 2225 ntTSL 1 (best)19.08■□□□□ 0.653e-10■■■□□ 19.1
UPF1Q92900 COASY-212ENST00000591583 716 ntTSL 218.26■□□□□ 0.513e-10■■■□□ 19.1
UPF1Q92900 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.293e-10■■■□□ 19.1
UPF1Q92900 COASY-201ENST00000393818 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.033e-10■■■□□ 19.1
UPF1Q92900 PRKAB2-203ENST00000496858 601 ntTSL 39.8□□□□□ -0.843e-10■■■□□ 19.1
UPF1Q92900 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.05■□□□□ -07e-7■■■□□ 19.1
UPF1Q92900 ALG1L13P-201ENST00000518201 521 ntTSL 5 BASIC16.47■□□□□ 0.233e-6■■■□□ 19.1
UPF1Q92900 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.391e-7■■■□□ 19.1
UPF1Q92900 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC8.08□□□□□ -1.122e-7■■■□□ 19
UPF1Q92900 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.672e-7■■■□□ 19
UPF1Q92900 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC27.2■■□□□ 1.948e-8■■■□□ 19
UPF1Q92900 TNPO3-203ENST00000471234 3283 ntTSL 1 (best) BASIC10.39□□□□□ -0.757e-8■■■□□ 19
UPF1Q92900 TNPO3-204ENST00000482320 3585 ntTSL 1 (best) BASIC9.54□□□□□ -0.887e-8■■■□□ 19
UPF1Q92900 PLXNB2-202ENST00000411680 704 ntTSL 224.26■■□□□ 1.471e-8■■■□□ 19
Retrieved 100 of 15,879 protein–RNA pairs in 191.4 ms