Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
RTF1Q92541 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
RTF1Q92541 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
RTF1Q92541 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
RTF1Q92541 ANKRD20A18P-201ENST00000359341 492 ntBASIC24.85■■□□□ 1.57
RTF1Q92541 AC022616.7-201ENST00000525383 220 ntBASIC24.85■■□□□ 1.57
RTF1Q92541 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC24.85■■□□□ 1.57
RTF1Q92541 LINC01238-205ENST00000567549 1107 ntBASIC24.85■■□□□ 1.57
RTF1Q92541 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
RTF1Q92541 AC140113.3-201ENST00000605663 199 ntBASIC24.85■■□□□ 1.57
RTF1Q92541 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC24.85■■□□□ 1.57
RTF1Q92541 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
RTF1Q92541 AFG3L1P-217ENST00000557444 2447 ntBASIC24.85■■□□□ 1.57
RTF1Q92541 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
RTF1Q92541 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
RTF1Q92541 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
RTF1Q92541 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC24.85■■□□□ 1.57
RTF1Q92541 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC24.85■■□□□ 1.57
RTF1Q92541 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC24.84■■□□□ 1.57
RTF1Q92541 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC24.84■■□□□ 1.57
RTF1Q92541 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
RTF1Q92541 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
RTF1Q92541 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
RTF1Q92541 TSPY5P-201ENST00000426936 936 ntBASIC24.84■■□□□ 1.57
RTF1Q92541 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC24.84■■□□□ 1.57
RTF1Q92541 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC24.84■■□□□ 1.57
RTF1Q92541 MIR4674-201ENST00000582457 87 ntBASIC24.84■■□□□ 1.57
RTF1Q92541 AC008622.2-201ENST00000617006 1229 ntBASIC24.84■■□□□ 1.57
RTF1Q92541 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
RTF1Q92541 AC011558.1-201ENST00000623459 338 ntBASIC24.84■■□□□ 1.57
RTF1Q92541 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
RTF1Q92541 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC24.84■■□□□ 1.57
RTF1Q92541 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC24.84■■□□□ 1.57
RTF1Q92541 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC24.84■■□□□ 1.57
RTF1Q92541 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
RTF1Q92541 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
RTF1Q92541 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
RTF1Q92541 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC24.83■■□□□ 1.57
RTF1Q92541 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
RTF1Q92541 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC24.83■■□□□ 1.57
RTF1Q92541 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC24.83■■□□□ 1.57
RTF1Q92541 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
RTF1Q92541 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
RTF1Q92541 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC24.83■■□□□ 1.57
RTF1Q92541 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC24.83■■□□□ 1.57
RTF1Q92541 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
RTF1Q92541 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
RTF1Q92541 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.57
RTF1Q92541 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC24.83■■□□□ 1.57
RTF1Q92541 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
RTF1Q92541 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.56
RTF1Q92541 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC24.83■■□□□ 1.56
RTF1Q92541 TEX21P-204ENST00000641479 1693 ntBASIC24.82■■□□□ 1.56
RTF1Q92541 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RTF1Q92541 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RTF1Q92541 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
RTF1Q92541 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RTF1Q92541 POLI-202ENST00000406285 2030 ntTSL 2 BASIC24.82■■□□□ 1.56
RTF1Q92541 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC24.82■■□□□ 1.56
RTF1Q92541 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC24.82■■□□□ 1.56
RTF1Q92541 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC24.82■■□□□ 1.56
RTF1Q92541 AC087388.1-201ENST00000571370 1112 ntBASIC24.82■■□□□ 1.56
RTF1Q92541 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC24.82■■□□□ 1.56
RTF1Q92541 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RTF1Q92541 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
RTF1Q92541 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RTF1Q92541 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
RTF1Q92541 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
RTF1Q92541 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC24.81■■□□□ 1.56
RTF1Q92541 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC24.81■■□□□ 1.56
RTF1Q92541 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC24.81■■□□□ 1.56
RTF1Q92541 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
RTF1Q92541 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC24.81■■□□□ 1.56
RTF1Q92541 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC24.81■■□□□ 1.56
RTF1Q92541 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC24.81■■□□□ 1.56
RTF1Q92541 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC24.81■■□□□ 1.56
RTF1Q92541 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
RTF1Q92541 TPM1-226ENST00000560959 925 ntTSL 2 BASIC24.81■■□□□ 1.56
RTF1Q92541 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC24.81■■□□□ 1.56
RTF1Q92541 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC24.81■■□□□ 1.56
RTF1Q92541 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
RTF1Q92541 AL023973.1-201ENST00000624619 620 ntBASIC24.81■■□□□ 1.56
RTF1Q92541 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
RTF1Q92541 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC24.81■■□□□ 1.56
RTF1Q92541 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC24.81■■□□□ 1.56
RTF1Q92541 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
RTF1Q92541 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
RTF1Q92541 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
RTF1Q92541 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC24.81■■□□□ 1.56
RTF1Q92541 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC24.81■■□□□ 1.56
RTF1Q92541 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC24.81■■□□□ 1.56
RTF1Q92541 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC24.81■■□□□ 1.56
RTF1Q92541 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
RTF1Q92541 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RTF1Q92541 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RTF1Q92541 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
RTF1Q92541 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC24.8■■□□□ 1.56
RTF1Q92541 Telomerase-vert.1-201ENST00000363312 438 ntBASIC24.8■■□□□ 1.56
RTF1Q92541 GUK1-204ENST00000366721 689 ntTSL 3 BASIC24.8■■□□□ 1.56
RTF1Q92541 AC092647.4-201ENST00000457211 535 ntBASIC24.8■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms