Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 KRT18P29-201ENST00000397031 1267 ntBASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.7■□□□□ 0.42
DEPDC4Q8N2C3 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 GATS-209ENST00000454084 1030 ntTSL 3 BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.42
DEPDC4Q8N2C3 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 MIR4651-201ENST00000582622 73 ntBASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 AC105020.6-201ENST00000621523 1217 ntBASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.68■□□□□ 0.42
DEPDC4Q8N2C3 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
DEPDC4Q8N2C3 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms