Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP43Q70EL4 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP43Q70EL4 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.3■□□□□ 0.36
USP43Q70EL4 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.3■□□□□ 0.36
USP43Q70EL4 ABALON-201ENST00000629058 1903 ntBASIC17.3■□□□□ 0.36
USP43Q70EL4 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC17.3■□□□□ 0.36
USP43Q70EL4 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP43Q70EL4 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC17.3■□□□□ 0.36
USP43Q70EL4 FAM201B-201ENST00000458407 597 ntBASIC17.3■□□□□ 0.36
USP43Q70EL4 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP43Q70EL4 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
USP43Q70EL4 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.3■□□□□ 0.36
USP43Q70EL4 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP43Q70EL4 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.3■□□□□ 0.36
USP43Q70EL4 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP43Q70EL4 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP43Q70EL4 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP43Q70EL4 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
USP43Q70EL4 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP43Q70EL4 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP43Q70EL4 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP43Q70EL4 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.3■□□□□ 0.36
USP43Q70EL4 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP43Q70EL4 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP43Q70EL4 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP43Q70EL4 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
USP43Q70EL4 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.29■□□□□ 0.36
USP43Q70EL4 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP43Q70EL4 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
USP43Q70EL4 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
USP43Q70EL4 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
USP43Q70EL4 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP43Q70EL4 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP43Q70EL4 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP43Q70EL4 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
USP43Q70EL4 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.29■□□□□ 0.36
USP43Q70EL4 AC007322.3-201ENST00000426526 701 ntBASIC17.29■□□□□ 0.36
USP43Q70EL4 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP43Q70EL4 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
USP43Q70EL4 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP43Q70EL4 AL138781.1-201ENST00000566567 1274 ntBASIC17.29■□□□□ 0.36
USP43Q70EL4 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
USP43Q70EL4 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
USP43Q70EL4 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP43Q70EL4 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.29■□□□□ 0.36
USP43Q70EL4 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP43Q70EL4 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.29■□□□□ 0.36
USP43Q70EL4 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP43Q70EL4 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP43Q70EL4 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC17.29■□□□□ 0.36
USP43Q70EL4 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP43Q70EL4 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP43Q70EL4 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP43Q70EL4 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.29■□□□□ 0.36
USP43Q70EL4 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP43Q70EL4 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP43Q70EL4 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP43Q70EL4 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP43Q70EL4 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.28■□□□□ 0.36
USP43Q70EL4 AL512353.2-201ENST00000448759 1962 ntBASIC17.28■□□□□ 0.36
USP43Q70EL4 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
USP43Q70EL4 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
USP43Q70EL4 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC17.28■□□□□ 0.36
USP43Q70EL4 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
USP43Q70EL4 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
USP43Q70EL4 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.28■□□□□ 0.36
USP43Q70EL4 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
USP43Q70EL4 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP43Q70EL4 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP43Q70EL4 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
USP43Q70EL4 KRT8P17-201ENST00000453110 1448 ntBASIC17.28■□□□□ 0.36
USP43Q70EL4 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
USP43Q70EL4 HTR7P1-202ENST00000624664 4411 ntBASIC17.28■□□□□ 0.36
USP43Q70EL4 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
USP43Q70EL4 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP43Q70EL4 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.27■□□□□ 0.36
USP43Q70EL4 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
USP43Q70EL4 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP43Q70EL4 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP43Q70EL4 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP43Q70EL4 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP43Q70EL4 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP43Q70EL4 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP43Q70EL4 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
USP43Q70EL4 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP43Q70EL4 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP43Q70EL4 SERP1-208ENST00000491660 830 ntTSL 2 BASIC17.27■□□□□ 0.36
USP43Q70EL4 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.27■□□□□ 0.36
USP43Q70EL4 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.27■□□□□ 0.36
USP43Q70EL4 SLC7A5P1-201ENST00000568957 537 ntBASIC17.27■□□□□ 0.36
USP43Q70EL4 AC138907.5-202ENST00000569484 235 ntBASIC17.27■□□□□ 0.36
USP43Q70EL4 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
USP43Q70EL4 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
USP43Q70EL4 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP43Q70EL4 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.27■□□□□ 0.35
USP43Q70EL4 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP43Q70EL4 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP43Q70EL4 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP43Q70EL4 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP43Q70EL4 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.27■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms