Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.28■□□□□ 0.52
COL28A1Q2UY09 AC096733.2-201ENST00000609937 1394 ntBASIC18.28■□□□□ 0.52
COL28A1Q2UY09 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL28A1Q2UY09 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL28A1Q2UY09 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL28A1Q2UY09 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 HLA-G-202ENST00000376815 851 ntBASIC18.27■□□□□ 0.52
COL28A1Q2UY09 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
COL28A1Q2UY09 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
COL28A1Q2UY09 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.27■□□□□ 0.51
COL28A1Q2UY09 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
COL28A1Q2UY09 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL28A1Q2UY09 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 TSPY17P-201ENST00000450329 467 ntBASIC18.26■□□□□ 0.51
COL28A1Q2UY09 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 AP006587.1-201ENST00000534129 1502 ntBASIC18.26■□□□□ 0.51
COL28A1Q2UY09 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
COL28A1Q2UY09 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 AC099778.1-201ENST00000568593 1911 ntBASIC18.25■□□□□ 0.51
COL28A1Q2UY09 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.25■□□□□ 0.51
COL28A1Q2UY09 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 LINC01311-201ENST00000565162 1445 ntBASIC18.24■□□□□ 0.51
COL28A1Q2UY09 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.24■□□□□ 0.51
COL28A1Q2UY09 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms