Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
RPL39P62891 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC13.47□□□□□ -0.25
RPL39P62891 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC13.47□□□□□ -0.25
RPL39P62891 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
RPL39P62891 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC13.47□□□□□ -0.25
RPL39P62891 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC13.47□□□□□ -0.25
RPL39P62891 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
RPL39P62891 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC13.47□□□□□ -0.25
RPL39P62891 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
RPL39P62891 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC13.47□□□□□ -0.25
RPL39P62891 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
RPL39P62891 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
RPL39P62891 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
RPL39P62891 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
RPL39P62891 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC13.47□□□□□ -0.25
RPL39P62891 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC13.46□□□□□ -0.25
RPL39P62891 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RPL39P62891 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RPL39P62891 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
RPL39P62891 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
RPL39P62891 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RPL39P62891 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC13.46□□□□□ -0.25
RPL39P62891 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RPL39P62891 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC13.46□□□□□ -0.25
RPL39P62891 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC13.46□□□□□ -0.25
RPL39P62891 TFP1-202ENST00000475455 1573 ntBASIC13.46□□□□□ -0.25
RPL39P62891 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RPL39P62891 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RPL39P62891 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC13.46□□□□□ -0.25
RPL39P62891 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
RPL39P62891 AC104417.2-201ENST00000562989 1793 ntBASIC13.46□□□□□ -0.25
RPL39P62891 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC13.46□□□□□ -0.25
RPL39P62891 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
RPL39P62891 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RPL39P62891 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RPL39P62891 CALM3-202ENST00000391918 702 ntTSL 2 BASIC13.46□□□□□ -0.25
RPL39P62891 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC13.46□□□□□ -0.25
RPL39P62891 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
RPL39P62891 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC13.46□□□□□ -0.25
RPL39P62891 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RPL39P62891 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RPL39P62891 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RPL39P62891 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC13.46□□□□□ -0.25
RPL39P62891 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC13.46□□□□□ -0.25
RPL39P62891 AC012313.1-201ENST00000593393 3059 ntBASIC13.46□□□□□ -0.25
RPL39P62891 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC13.46□□□□□ -0.25
RPL39P62891 ABALON-201ENST00000629058 1903 ntBASIC13.46□□□□□ -0.25
RPL39P62891 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
RPL39P62891 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RPL39P62891 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RPL39P62891 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC13.46□□□□□ -0.26
RPL39P62891 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RPL39P62891 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RPL39P62891 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
RPL39P62891 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
RPL39P62891 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RPL39P62891 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RPL39P62891 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
RPL39P62891 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
RPL39P62891 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC13.46□□□□□ -0.26
RPL39P62891 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC13.46□□□□□ -0.26
RPL39P62891 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RPL39P62891 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
RPL39P62891 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RPL39P62891 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC13.45□□□□□ -0.26
RPL39P62891 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC13.45□□□□□ -0.26
RPL39P62891 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
RPL39P62891 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
RPL39P62891 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RPL39P62891 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC13.45□□□□□ -0.26
RPL39P62891 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC13.45□□□□□ -0.26
RPL39P62891 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RPL39P62891 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RPL39P62891 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC13.45□□□□□ -0.26
RPL39P62891 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
RPL39P62891 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC13.45□□□□□ -0.26
RPL39P62891 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC13.45□□□□□ -0.26
RPL39P62891 SPI1-203ENST00000533030 661 ntTSL 2 BASIC13.45□□□□□ -0.26
RPL39P62891 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC13.45□□□□□ -0.26
RPL39P62891 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms