Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SRP54P61011 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SRP54P61011 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SRP54P61011 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SRP54P61011 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.77■□□□□ 0.6
SRP54P61011 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SRP54P61011 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SRP54P61011 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SRP54P61011 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
SRP54P61011 TSPY21P-201ENST00000433481 731 ntBASIC18.77■□□□□ 0.6
SRP54P61011 TSPY23P-201ENST00000440136 739 ntBASIC18.77■□□□□ 0.6
SRP54P61011 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.77■□□□□ 0.6
SRP54P61011 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SRP54P61011 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
SRP54P61011 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SRP54P61011 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SRP54P61011 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.77■□□□□ 0.6
SRP54P61011 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SRP54P61011 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SRP54P61011 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SRP54P61011 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SRP54P61011 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SRP54P61011 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SRP54P61011 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SRP54P61011 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SRP54P61011 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SRP54P61011 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.76■□□□□ 0.59
SRP54P61011 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SRP54P61011 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SRP54P61011 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.76■□□□□ 0.59
SRP54P61011 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.76■□□□□ 0.59
SRP54P61011 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SRP54P61011 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SRP54P61011 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.76■□□□□ 0.59
SRP54P61011 COX11P1-201ENST00000489116 835 ntBASIC18.76■□□□□ 0.59
SRP54P61011 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.76■□□□□ 0.59
SRP54P61011 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.76■□□□□ 0.59
SRP54P61011 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
SRP54P61011 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
SRP54P61011 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SRP54P61011 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
SRP54P61011 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SRP54P61011 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.76■□□□□ 0.59
SRP54P61011 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SRP54P61011 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SRP54P61011 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
SRP54P61011 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.76■□□□□ 0.59
SRP54P61011 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SRP54P61011 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SRP54P61011 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.75■□□□□ 0.59
SRP54P61011 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.75■□□□□ 0.59
SRP54P61011 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SRP54P61011 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.75■□□□□ 0.59
SRP54P61011 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SRP54P61011 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SRP54P61011 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SRP54P61011 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.75■□□□□ 0.59
SRP54P61011 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SRP54P61011 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SRP54P61011 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SRP54P61011 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.75■□□□□ 0.59
SRP54P61011 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.75■□□□□ 0.59
SRP54P61011 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SRP54P61011 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.75■□□□□ 0.59
SRP54P61011 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.75■□□□□ 0.59
SRP54P61011 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SRP54P61011 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.75■□□□□ 0.59
SRP54P61011 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.75■□□□□ 0.59
SRP54P61011 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SRP54P61011 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SRP54P61011 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SRP54P61011 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SRP54P61011 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SRP54P61011 PCDHAC2-203ENST00000615316 3011 ntBASIC18.74■□□□□ 0.59
SRP54P61011 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
SRP54P61011 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SRP54P61011 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SRP54P61011 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.74■□□□□ 0.59
SRP54P61011 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.74■□□□□ 0.59
SRP54P61011 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.74■□□□□ 0.59
SRP54P61011 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.74■□□□□ 0.59
SRP54P61011 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SRP54P61011 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SRP54P61011 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SRP54P61011 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SRP54P61011 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SRP54P61011 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.74■□□□□ 0.59
SRP54P61011 RNF152P1-201ENST00000397754 604 ntBASIC18.74■□□□□ 0.59
SRP54P61011 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SRP54P61011 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.74■□□□□ 0.59
SRP54P61011 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.74■□□□□ 0.59
SRP54P61011 YBX1P2-201ENST00000489612 999 ntBASIC18.74■□□□□ 0.59
SRP54P61011 AC063952.2-201ENST00000498792 1227 ntBASIC18.74■□□□□ 0.59
SRP54P61011 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.74■□□□□ 0.59
SRP54P61011 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.74■□□□□ 0.59
SRP54P61011 LINC01238-205ENST00000567549 1107 ntBASIC18.74■□□□□ 0.59
SRP54P61011 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SRP54P61011 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SRP54P61011 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.74■□□□□ 0.59
SRP54P61011 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms