Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RFX3P48380 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
RFX3P48380 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RFX3P48380 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
RFX3P48380 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.89■□□□□ 0.45
RFX3P48380 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RFX3P48380 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
RFX3P48380 AC133681.1-201ENST00000465482 601 ntBASIC17.89■□□□□ 0.45
RFX3P48380 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.89■□□□□ 0.45
RFX3P48380 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.89■□□□□ 0.45
RFX3P48380 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.89■□□□□ 0.45
RFX3P48380 C1QL1P1-201ENST00000568105 661 ntBASIC17.89■□□□□ 0.45
RFX3P48380 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.89■□□□□ 0.45
RFX3P48380 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.89■□□□□ 0.45
RFX3P48380 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.89■□□□□ 0.45
RFX3P48380 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RFX3P48380 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RFX3P48380 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RFX3P48380 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.89■□□□□ 0.45
RFX3P48380 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.89■□□□□ 0.45
RFX3P48380 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
RFX3P48380 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
RFX3P48380 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RFX3P48380 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.89■□□□□ 0.45
RFX3P48380 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.88■□□□□ 0.45
RFX3P48380 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
RFX3P48380 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RFX3P48380 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RFX3P48380 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RFX3P48380 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
RFX3P48380 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
RFX3P48380 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RFX3P48380 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
RFX3P48380 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RFX3P48380 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.88■□□□□ 0.45
RFX3P48380 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RFX3P48380 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.88■□□□□ 0.45
RFX3P48380 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
RFX3P48380 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
RFX3P48380 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RFX3P48380 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RFX3P48380 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RFX3P48380 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.88■□□□□ 0.45
RFX3P48380 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.88■□□□□ 0.45
RFX3P48380 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.88■□□□□ 0.45
RFX3P48380 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
RFX3P48380 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.88■□□□□ 0.45
RFX3P48380 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.88■□□□□ 0.45
RFX3P48380 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
RFX3P48380 HTR7P1-201ENST00000538670 1336 ntBASIC17.88■□□□□ 0.45
RFX3P48380 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
RFX3P48380 AC104417.2-201ENST00000562989 1793 ntBASIC17.88■□□□□ 0.45
RFX3P48380 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RFX3P48380 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RFX3P48380 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
RFX3P48380 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
RFX3P48380 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.88■□□□□ 0.45
RFX3P48380 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.88■□□□□ 0.45
RFX3P48380 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RFX3P48380 TNXA-203ENST00000507684 2038 ntBASIC17.88■□□□□ 0.45
RFX3P48380 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RFX3P48380 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX3P48380 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX3P48380 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RFX3P48380 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.87■□□□□ 0.45
RFX3P48380 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX3P48380 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX3P48380 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RFX3P48380 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX3P48380 AP000974.1-201ENST00000623909 2387 ntBASIC17.87■□□□□ 0.45
RFX3P48380 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX3P48380 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RFX3P48380 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.87■□□□□ 0.45
RFX3P48380 AC098590.1-201ENST00000468126 897 ntBASIC17.87■□□□□ 0.45
RFX3P48380 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.87■□□□□ 0.45
RFX3P48380 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
RFX3P48380 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.87■□□□□ 0.45
RFX3P48380 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.87■□□□□ 0.45
RFX3P48380 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX3P48380 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX3P48380 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.87■□□□□ 0.45
RFX3P48380 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
RFX3P48380 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX3P48380 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
RFX3P48380 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.87■□□□□ 0.45
RFX3P48380 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX3P48380 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX3P48380 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX3P48380 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
RFX3P48380 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RFX3P48380 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RFX3P48380 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
RFX3P48380 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX3P48380 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX3P48380 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
RFX3P48380 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RFX3P48380 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.86■□□□□ 0.45
RFX3P48380 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
RFX3P48380 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.86■□□□□ 0.45
RFX3P48380 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms