Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SHMT2P34897 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.65■□□□□ 0.58
SHMT2P34897 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SHMT2P34897 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.65■□□□□ 0.58
SHMT2P34897 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.65■□□□□ 0.58
SHMT2P34897 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHMT2P34897 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.65■□□□□ 0.58
SHMT2P34897 AC130371.2-201ENST00000619443 611 ntBASIC18.65■□□□□ 0.58
SHMT2P34897 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.65■□□□□ 0.58
SHMT2P34897 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.65■□□□□ 0.58
SHMT2P34897 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.65■□□□□ 0.58
SHMT2P34897 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SHMT2P34897 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SHMT2P34897 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHMT2P34897 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHMT2P34897 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
SHMT2P34897 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
SHMT2P34897 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SHMT2P34897 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHMT2P34897 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.64■□□□□ 0.57
SHMT2P34897 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHMT2P34897 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
SHMT2P34897 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHMT2P34897 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
SHMT2P34897 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SHMT2P34897 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.64■□□□□ 0.57
SHMT2P34897 FAM207BP-201ENST00000447172 505 ntBASIC18.64■□□□□ 0.57
SHMT2P34897 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.64■□□□□ 0.57
SHMT2P34897 AC091390.4-202ENST00000476426 537 ntBASIC18.64■□□□□ 0.57
SHMT2P34897 BX088651.1-201ENST00000540551 451 ntBASIC18.64■□□□□ 0.57
SHMT2P34897 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.64■□□□□ 0.57
SHMT2P34897 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.64■□□□□ 0.57
SHMT2P34897 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.64■□□□□ 0.57
SHMT2P34897 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SHMT2P34897 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.64■□□□□ 0.57
SHMT2P34897 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.64■□□□□ 0.57
SHMT2P34897 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.64■□□□□ 0.57
SHMT2P34897 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHMT2P34897 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.64■□□□□ 0.57
SHMT2P34897 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHMT2P34897 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SHMT2P34897 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.64■□□□□ 0.57
SHMT2P34897 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.64■□□□□ 0.57
SHMT2P34897 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHMT2P34897 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHMT2P34897 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.64■□□□□ 0.57
SHMT2P34897 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHMT2P34897 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SHMT2P34897 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.63■□□□□ 0.57
SHMT2P34897 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHMT2P34897 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.63■□□□□ 0.57
SHMT2P34897 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SHMT2P34897 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHMT2P34897 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHMT2P34897 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHMT2P34897 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
SHMT2P34897 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.63■□□□□ 0.57
SHMT2P34897 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHMT2P34897 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.63■□□□□ 0.57
SHMT2P34897 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SHMT2P34897 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.63■□□□□ 0.57
SHMT2P34897 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.63■□□□□ 0.57
SHMT2P34897 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.63■□□□□ 0.57
SHMT2P34897 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SHMT2P34897 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.63■□□□□ 0.57
SHMT2P34897 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.63■□□□□ 0.57
SHMT2P34897 AP000692.2-201ENST00000608391 879 ntBASIC18.63■□□□□ 0.57
SHMT2P34897 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
SHMT2P34897 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHMT2P34897 LETM1P2-201ENST00000597330 2178 ntBASIC18.63■□□□□ 0.57
SHMT2P34897 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHMT2P34897 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHMT2P34897 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.63■□□□□ 0.57
SHMT2P34897 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SHMT2P34897 KRT8P41-201ENST00000533985 1514 ntBASIC18.63■□□□□ 0.57
SHMT2P34897 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SHMT2P34897 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
SHMT2P34897 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHMT2P34897 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.62■□□□□ 0.57
SHMT2P34897 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
SHMT2P34897 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHMT2P34897 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.62■□□□□ 0.57
SHMT2P34897 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHMT2P34897 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHMT2P34897 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHMT2P34897 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SHMT2P34897 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHMT2P34897 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHMT2P34897 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
SHMT2P34897 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
SHMT2P34897 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHMT2P34897 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHMT2P34897 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.62■□□□□ 0.57
SHMT2P34897 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.62■□□□□ 0.57
SHMT2P34897 TSPY15P-201ENST00000457163 923 ntBASIC18.62■□□□□ 0.57
SHMT2P34897 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHMT2P34897 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.62■□□□□ 0.57
SHMT2P34897 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.62■□□□□ 0.57
SHMT2P34897 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHMT2P34897 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms