Protein–RNA interactions for Protein: P20036

HLA-DPA1, HLA class II histocompatibility antigen, DP alpha 1 chain, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1P20036 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DPA1P20036 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DPA1P20036 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DPA1P20036 MIR718-201ENST00000390190 70 ntBASIC19.23■□□□□ 0.67
HLA-DPA1P20036 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.23■□□□□ 0.67
HLA-DPA1P20036 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.23■□□□□ 0.67
HLA-DPA1P20036 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DPA1P20036 B3GAT3P1-201ENST00000471720 806 ntBASIC19.23■□□□□ 0.67
HLA-DPA1P20036 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
HLA-DPA1P20036 AC008550.1-201ENST00000511500 884 ntBASIC19.23■□□□□ 0.67
HLA-DPA1P20036 AC093827.2-201ENST00000512654 315 ntBASIC19.23■□□□□ 0.67
HLA-DPA1P20036 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DPA1P20036 KRT8P11-201ENST00000409686 1436 ntBASIC19.23■□□□□ 0.67
HLA-DPA1P20036 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
HLA-DPA1P20036 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DPA1P20036 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DPA1P20036 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.23■□□□□ 0.67
HLA-DPA1P20036 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DPA1P20036 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DPA1P20036 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 Z99916.2-201ENST00000604037 246 ntBASIC19.22■□□□□ 0.67
HLA-DPA1P20036 AC130371.2-201ENST00000619443 611 ntBASIC19.22■□□□□ 0.67
HLA-DPA1P20036 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.22■□□□□ 0.67
HLA-DPA1P20036 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 AL049812.1-201ENST00000432563 2267 ntBASIC19.21■□□□□ 0.67
HLA-DPA1P20036 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 AC011506.1-201ENST00000474329 610 ntBASIC19.21■□□□□ 0.67
HLA-DPA1P20036 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 NUDT16P1-203ENST00000513809 620 ntBASIC19.21■□□□□ 0.67
HLA-DPA1P20036 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DPA1P20036 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
HLA-DPA1P20036 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DPA1P20036 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.2■□□□□ 0.66
HLA-DPA1P20036 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DPA1P20036 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
HLA-DPA1P20036 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DPA1P20036 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.2■□□□□ 0.66
HLA-DPA1P20036 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DPA1P20036 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DPA1P20036 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.2■□□□□ 0.66
HLA-DPA1P20036 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DPA1P20036 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
HLA-DPA1P20036 MESTP1-201ENST00000404287 994 ntBASIC19.2■□□□□ 0.66
HLA-DPA1P20036 FAM207BP-201ENST00000447172 505 ntBASIC19.2■□□□□ 0.66
HLA-DPA1P20036 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.2■□□□□ 0.66
HLA-DPA1P20036 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.2■□□□□ 0.66
HLA-DPA1P20036 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.2■□□□□ 0.66
HLA-DPA1P20036 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DPA1P20036 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DPA1P20036 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms