Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGA1P17096 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGA1P17096 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC19.78■□□□□ 0.76
HMGA1P17096 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGA1P17096 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGA1P17096 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
HMGA1P17096 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGA1P17096 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.77■□□□□ 0.76
HMGA1P17096 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
HMGA1P17096 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HMGA1P17096 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGA1P17096 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGA1P17096 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGA1P17096 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGA1P17096 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGA1P17096 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGA1P17096 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HMGA1P17096 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.77■□□□□ 0.76
HMGA1P17096 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGA1P17096 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.77■□□□□ 0.76
HMGA1P17096 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGA1P17096 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.77■□□□□ 0.76
HMGA1P17096 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.77■□□□□ 0.76
HMGA1P17096 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.77■□□□□ 0.76
HMGA1P17096 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.77■□□□□ 0.76
HMGA1P17096 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.77■□□□□ 0.76
HMGA1P17096 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGA1P17096 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HMGA1P17096 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.77■□□□□ 0.76
HMGA1P17096 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGA1P17096 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
HMGA1P17096 AC036111.1-201ENST00000533973 1582 ntBASIC19.77■□□□□ 0.76
HMGA1P17096 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HMGA1P17096 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
HMGA1P17096 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
HMGA1P17096 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.76■□□□□ 0.75
HMGA1P17096 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGA1P17096 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.76■□□□□ 0.75
HMGA1P17096 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGA1P17096 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.76■□□□□ 0.75
HMGA1P17096 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGA1P17096 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.76■□□□□ 0.75
HMGA1P17096 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
HMGA1P17096 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.76■□□□□ 0.75
HMGA1P17096 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.76■□□□□ 0.75
HMGA1P17096 SPDYE15P-201ENST00000424157 909 ntBASIC19.76■□□□□ 0.75
HMGA1P17096 AC112907.2-201ENST00000448639 330 ntBASIC19.76■□□□□ 0.75
HMGA1P17096 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
HMGA1P17096 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.76■□□□□ 0.75
HMGA1P17096 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.76■□□□□ 0.75
HMGA1P17096 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.76■□□□□ 0.75
HMGA1P17096 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.76■□□□□ 0.75
HMGA1P17096 AP000550.4-202ENST00000639755 178 ntBASIC19.76■□□□□ 0.75
HMGA1P17096 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HMGA1P17096 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGA1P17096 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGA1P17096 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGA1P17096 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGA1P17096 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGA1P17096 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HMGA1P17096 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
HMGA1P17096 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGA1P17096 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HMGA1P17096 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.75■□□□□ 0.75
HMGA1P17096 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGA1P17096 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
HMGA1P17096 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGA1P17096 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGA1P17096 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.75■□□□□ 0.75
HMGA1P17096 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGA1P17096 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.75■□□□□ 0.75
HMGA1P17096 PCED1CP-201ENST00000419887 785 ntBASIC19.75■□□□□ 0.75
HMGA1P17096 UPK3BP1-201ENST00000428678 509 ntBASIC19.75■□□□□ 0.75
HMGA1P17096 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.75■□□□□ 0.75
HMGA1P17096 MCCD1P1-208ENST00000445732 328 ntBASIC19.75■□□□□ 0.75
HMGA1P17096 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.75■□□□□ 0.75
HMGA1P17096 MIR3180-5-201ENST00000583743 153 ntBASIC19.75■□□□□ 0.75
HMGA1P17096 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
HMGA1P17096 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGA1P17096 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.75■□□□□ 0.75
HMGA1P17096 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.75■□□□□ 0.75
HMGA1P17096 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
HMGA1P17096 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.75■□□□□ 0.75
HMGA1P17096 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HMGA1P17096 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.75■□□□□ 0.75
HMGA1P17096 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HMGA1P17096 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGA1P17096 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.74■□□□□ 0.75
HMGA1P17096 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
HMGA1P17096 AFG3L1P-217ENST00000557444 2447 ntBASIC19.74■□□□□ 0.75
HMGA1P17096 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGA1P17096 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.74■□□□□ 0.75
HMGA1P17096 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGA1P17096 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.74■□□□□ 0.75
HMGA1P17096 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGA1P17096 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGA1P17096 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGA1P17096 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.74■□□□□ 0.75
HMGA1P17096 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGA1P17096 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms