Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SIX3O95343 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.63■□□□□ 0.57
SIX3O95343 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.63■□□□□ 0.57
SIX3O95343 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.63■□□□□ 0.57
SIX3O95343 Z98044.1-201ENST00000632503 1764 ntBASIC18.63■□□□□ 0.57
SIX3O95343 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SIX3O95343 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX3O95343 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SIX3O95343 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX3O95343 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX3O95343 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX3O95343 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.63■□□□□ 0.57
SIX3O95343 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX3O95343 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.62■□□□□ 0.57
SIX3O95343 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.62■□□□□ 0.57
SIX3O95343 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
SIX3O95343 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX3O95343 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX3O95343 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX3O95343 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.62■□□□□ 0.57
SIX3O95343 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.62■□□□□ 0.57
SIX3O95343 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.62■□□□□ 0.57
SIX3O95343 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.62■□□□□ 0.57
SIX3O95343 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SIX3O95343 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SIX3O95343 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.62■□□□□ 0.57
SIX3O95343 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.62■□□□□ 0.57
SIX3O95343 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.62■□□□□ 0.57
SIX3O95343 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.62■□□□□ 0.57
SIX3O95343 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX3O95343 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SIX3O95343 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX3O95343 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX3O95343 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX3O95343 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SIX3O95343 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX3O95343 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
SIX3O95343 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX3O95343 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX3O95343 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.61■□□□□ 0.57
SIX3O95343 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX3O95343 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX3O95343 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SIX3O95343 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX3O95343 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SIX3O95343 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.61■□□□□ 0.57
SIX3O95343 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SIX3O95343 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.61■□□□□ 0.57
SIX3O95343 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX3O95343 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.61■□□□□ 0.57
SIX3O95343 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.61■□□□□ 0.57
SIX3O95343 TSPY23P-201ENST00000440136 739 ntBASIC18.61■□□□□ 0.57
SIX3O95343 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.61■□□□□ 0.57
SIX3O95343 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
SIX3O95343 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.61■□□□□ 0.57
SIX3O95343 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.61■□□□□ 0.57
SIX3O95343 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX3O95343 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
SIX3O95343 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX3O95343 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX3O95343 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SIX3O95343 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX3O95343 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX3O95343 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.6■□□□□ 0.57
SIX3O95343 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX3O95343 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.6■□□□□ 0.57
SIX3O95343 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
SIX3O95343 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX3O95343 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX3O95343 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX3O95343 KRASP1-201ENST00000407852 552 ntBASIC18.6■□□□□ 0.57
SIX3O95343 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.6■□□□□ 0.57
SIX3O95343 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.6■□□□□ 0.57
SIX3O95343 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX3O95343 KRT18P6-201ENST00000555540 1265 ntBASIC18.6■□□□□ 0.57
SIX3O95343 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.6■□□□□ 0.57
SIX3O95343 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.6■□□□□ 0.57
SIX3O95343 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX3O95343 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX3O95343 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX3O95343 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.6■□□□□ 0.57
SIX3O95343 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX3O95343 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX3O95343 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SIX3O95343 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX3O95343 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.6■□□□□ 0.57
SIX3O95343 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SIX3O95343 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.59■□□□□ 0.57
SIX3O95343 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SIX3O95343 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.59■□□□□ 0.57
SIX3O95343 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.59■□□□□ 0.57
SIX3O95343 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.59■□□□□ 0.57
SIX3O95343 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SIX3O95343 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SIX3O95343 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SIX3O95343 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SIX3O95343 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SIX3O95343 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SIX3O95343 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SIX3O95343 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms