Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDB3O75112 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
LDB3O75112 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDB3O75112 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
LDB3O75112 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.92■□□□□ 0.46
LDB3O75112 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
LDB3O75112 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.92■□□□□ 0.46
LDB3O75112 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDB3O75112 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDB3O75112 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
LDB3O75112 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.92■□□□□ 0.46
LDB3O75112 CRYGFP-201ENST00000418459 633 ntBASIC17.92■□□□□ 0.46
LDB3O75112 AL390955.1-201ENST00000428694 934 ntBASIC17.92■□□□□ 0.46
LDB3O75112 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.92■□□□□ 0.46
LDB3O75112 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LDB3O75112 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LDB3O75112 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
LDB3O75112 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDB3O75112 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDB3O75112 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
LDB3O75112 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDB3O75112 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LDB3O75112 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.91■□□□□ 0.46
LDB3O75112 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LDB3O75112 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LDB3O75112 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LDB3O75112 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LDB3O75112 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LDB3O75112 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LDB3O75112 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
LDB3O75112 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
LDB3O75112 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.91■□□□□ 0.46
LDB3O75112 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
LDB3O75112 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.91■□□□□ 0.46
LDB3O75112 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LDB3O75112 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LDB3O75112 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.91■□□□□ 0.46
LDB3O75112 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.91■□□□□ 0.46
LDB3O75112 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LDB3O75112 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LDB3O75112 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LDB3O75112 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.91■□□□□ 0.46
LDB3O75112 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
LDB3O75112 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LDB3O75112 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LDB3O75112 MFAP1P1-201ENST00000442257 1255 ntBASIC17.91■□□□□ 0.46
LDB3O75112 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.91■□□□□ 0.46
LDB3O75112 PRSS44-201ENST00000515154 1146 ntBASIC17.91■□□□□ 0.46
LDB3O75112 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.91■□□□□ 0.46
LDB3O75112 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.91■□□□□ 0.46
LDB3O75112 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LDB3O75112 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LDB3O75112 FEM1AP3-201ENST00000403722 1741 ntBASIC17.91■□□□□ 0.46
LDB3O75112 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.91■□□□□ 0.46
LDB3O75112 FP475955.4-201ENST00000623131 1990 ntBASIC17.91■□□□□ 0.46
LDB3O75112 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LDB3O75112 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.91■□□□□ 0.46
LDB3O75112 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.91■□□□□ 0.46
LDB3O75112 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.91■□□□□ 0.46
LDB3O75112 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.91■□□□□ 0.46
LDB3O75112 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.9■□□□□ 0.46
LDB3O75112 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
LDB3O75112 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
LDB3O75112 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
LDB3O75112 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
LDB3O75112 MIR1238-201ENST00000408483 83 ntBASIC17.9■□□□□ 0.46
LDB3O75112 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.9■□□□□ 0.46
LDB3O75112 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.9■□□□□ 0.46
LDB3O75112 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 CKBP1-201ENST00000565489 1086 ntBASIC17.9■□□□□ 0.46
LDB3O75112 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.9■□□□□ 0.46
LDB3O75112 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
LDB3O75112 AC087289.5-201ENST00000586076 3175 ntBASIC17.9■□□□□ 0.46
LDB3O75112 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
LDB3O75112 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LDB3O75112 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.9■□□□□ 0.46
LDB3O75112 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
LDB3O75112 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
LDB3O75112 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms