Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
SOX1O00570 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SOX1O00570 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SOX1O00570 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC20.27■□□□□ 0.84
SOX1O00570 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SOX1O00570 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC20.27■□□□□ 0.84
SOX1O00570 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC20.27■□□□□ 0.84
SOX1O00570 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.27■□□□□ 0.84
SOX1O00570 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.27■□□□□ 0.84
SOX1O00570 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC20.27■□□□□ 0.84
SOX1O00570 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC20.27■□□□□ 0.84
SOX1O00570 AL591684.3-201ENST00000605187 298 ntBASIC20.27■□□□□ 0.84
SOX1O00570 AL596442.2-201ENST00000610240 980 ntBASIC20.27■□□□□ 0.84
SOX1O00570 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SOX1O00570 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
SOX1O00570 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SOX1O00570 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.27■□□□□ 0.83
SOX1O00570 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SOX1O00570 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.27■□□□□ 0.83
SOX1O00570 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SOX1O00570 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
SOX1O00570 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SOX1O00570 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX1O00570 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX1O00570 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX1O00570 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX1O00570 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
SOX1O00570 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
SOX1O00570 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX1O00570 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX1O00570 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX1O00570 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SOX1O00570 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX1O00570 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX1O00570 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX1O00570 AL591424.1-201ENST00000442569 1213 ntBASIC20.26■□□□□ 0.83
SOX1O00570 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX1O00570 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX1O00570 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
SOX1O00570 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SOX1O00570 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC20.26■□□□□ 0.83
SOX1O00570 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SOX1O00570 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
SOX1O00570 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SOX1O00570 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC20.26■□□□□ 0.83
SOX1O00570 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SOX1O00570 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.26■□□□□ 0.83
SOX1O00570 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.26■□□□□ 0.83
SOX1O00570 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.26■□□□□ 0.83
SOX1O00570 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.26■□□□□ 0.83
SOX1O00570 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX1O00570 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SOX1O00570 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX1O00570 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SOX1O00570 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SOX1O00570 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SOX1O00570 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SOX1O00570 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.25■□□□□ 0.83
SOX1O00570 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SOX1O00570 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
SOX1O00570 PMP22-202ENST00000395936 816 ntTSL 3 BASIC20.25■□□□□ 0.83
SOX1O00570 MINOS1P3-201ENST00000457048 203 ntBASIC20.25■□□□□ 0.83
SOX1O00570 RN7SL606P-201ENST00000472779 293 ntBASIC20.25■□□□□ 0.83
SOX1O00570 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC20.25■□□□□ 0.83
SOX1O00570 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SOX1O00570 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC20.25■□□□□ 0.83
SOX1O00570 AC040169.1-201ENST00000565382 521 ntBASIC20.25■□□□□ 0.83
SOX1O00570 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.25■□□□□ 0.83
SOX1O00570 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC20.25■□□□□ 0.83
SOX1O00570 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.25■□□□□ 0.83
SOX1O00570 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SOX1O00570 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SOX1O00570 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SOX1O00570 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SOX1O00570 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.25■□□□□ 0.83
SOX1O00570 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.25■□□□□ 0.83
SOX1O00570 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SOX1O00570 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.24■□□□□ 0.83
SOX1O00570 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SOX1O00570 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SOX1O00570 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SOX1O00570 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.24■□□□□ 0.83
SOX1O00570 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SOX1O00570 COA5-202ENST00000409997 557 ntTSL 4 BASIC20.24■□□□□ 0.83
SOX1O00570 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC20.24■□□□□ 0.83
SOX1O00570 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC20.24■□□□□ 0.83
SOX1O00570 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SOX1O00570 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC20.24■□□□□ 0.83
SOX1O00570 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.24■□□□□ 0.83
SOX1O00570 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC20.24■□□□□ 0.83
SOX1O00570 MIR5100-201ENST00000579544 119 ntBASIC20.24■□□□□ 0.83
SOX1O00570 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SOX1O00570 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC20.24■□□□□ 0.83
SOX1O00570 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SOX1O00570 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SOX1O00570 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.24■□□□□ 0.83
SOX1O00570 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
SOX1O00570 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SOX1O00570 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
SOX1O00570 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms