Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.12■□□□□ 0.49
PDLIM1O00151 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.12■□□□□ 0.49
PDLIM1O00151 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
PDLIM1O00151 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM1O00151 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.12■□□□□ 0.49
PDLIM1O00151 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
PDLIM1O00151 AC142086.2-201ENST00000569753 217 ntBASIC18.12■□□□□ 0.49
PDLIM1O00151 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.12■□□□□ 0.49
PDLIM1O00151 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.12■□□□□ 0.49
PDLIM1O00151 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.12■□□□□ 0.49
PDLIM1O00151 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM1O00151 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM1O00151 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM1O00151 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.12■□□□□ 0.49
PDLIM1O00151 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.12■□□□□ 0.49
PDLIM1O00151 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.12■□□□□ 0.49
PDLIM1O00151 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.12■□□□□ 0.49
PDLIM1O00151 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM1O00151 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM1O00151 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM1O00151 SIRPAP1-201ENST00000448467 1770 ntBASIC18.12■□□□□ 0.49
PDLIM1O00151 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.12■□□□□ 0.49
PDLIM1O00151 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
PDLIM1O00151 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM1O00151 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
PDLIM1O00151 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
PDLIM1O00151 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM1O00151 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
PDLIM1O00151 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.11■□□□□ 0.49
PDLIM1O00151 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM1O00151 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM1O00151 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM1O00151 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.11■□□□□ 0.49
PDLIM1O00151 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
PDLIM1O00151 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM1O00151 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM1O00151 KRT8P20-201ENST00000423953 1409 ntBASIC18.11■□□□□ 0.49
PDLIM1O00151 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM1O00151 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM1O00151 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM1O00151 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM1O00151 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.11■□□□□ 0.49
PDLIM1O00151 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM1O00151 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.11■□□□□ 0.49
PDLIM1O00151 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM1O00151 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM1O00151 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM1O00151 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM1O00151 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM1O00151 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM1O00151 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM1O00151 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM1O00151 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM1O00151 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM1O00151 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM1O00151 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM1O00151 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.1■□□□□ 0.49
PDLIM1O00151 PHGDH-210ENST00000641115 1638 ntBASIC18.1■□□□□ 0.49
PDLIM1O00151 CYP21A1P-202ENST00000354927 1481 ntBASIC18.1■□□□□ 0.49
PDLIM1O00151 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM1O00151 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.1■□□□□ 0.49
PDLIM1O00151 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.1■□□□□ 0.49
PDLIM1O00151 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.1■□□□□ 0.49
PDLIM1O00151 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.1■□□□□ 0.49
PDLIM1O00151 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM1O00151 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
PDLIM1O00151 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PDLIM1O00151 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM1O00151 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.09■□□□□ 0.49
PDLIM1O00151 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM1O00151 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.09■□□□□ 0.49
PDLIM1O00151 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM1O00151 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM1O00151 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM1O00151 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.09■□□□□ 0.49
PDLIM1O00151 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM1O00151 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
PDLIM1O00151 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM1O00151 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.09■□□□□ 0.49
PDLIM1O00151 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
PDLIM1O00151 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
PDLIM1O00151 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.09■□□□□ 0.49
PDLIM1O00151 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.09■□□□□ 0.49
PDLIM1O00151 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.09■□□□□ 0.49
PDLIM1O00151 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.09■□□□□ 0.49
PDLIM1O00151 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.09■□□□□ 0.49
PDLIM1O00151 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
PDLIM1O00151 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM1O00151 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.09■□□□□ 0.49
PDLIM1O00151 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
PDLIM1O00151 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM1O00151 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.09■□□□□ 0.49
PDLIM1O00151 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM1O00151 Z98044.1-201ENST00000632503 1764 ntBASIC18.09■□□□□ 0.49
PDLIM1O00151 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM1O00151 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PDLIM1O00151 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.08■□□□□ 0.49
PDLIM1O00151 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PDLIM1O00151 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.08■□□□□ 0.49
PDLIM1O00151 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms