Protein–RNA interactions for Protein: A2RUB6

CCDC66, Coiled-coil domain-containing protein 66, humanhuman

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC66A2RUB6 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
CCDC66A2RUB6 LSM12P1-201ENST00000411836 588 ntBASIC20.58■□□□□ 0.89
CCDC66A2RUB6 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC66A2RUB6 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC66A2RUB6 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.88
CCDC66A2RUB6 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
CCDC66A2RUB6 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC20.58■□□□□ 0.88
CCDC66A2RUB6 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.58■□□□□ 0.88
CCDC66A2RUB6 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.58■□□□□ 0.88
CCDC66A2RUB6 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC66A2RUB6 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 AC018553.1-201ENST00000616682 1458 ntBASIC20.57■□□□□ 0.88
CCDC66A2RUB6 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 AC009053.2-201ENST00000563701 2365 ntBASIC20.57■□□□□ 0.88
CCDC66A2RUB6 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 AC092437.1-201ENST00000624794 1048 ntBASIC20.57■□□□□ 0.88
CCDC66A2RUB6 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 AC124067.4-201ENST00000519691 2379 ntBASIC20.57■□□□□ 0.88
CCDC66A2RUB6 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC66A2RUB6 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 AC116351.2-201ENST00000606540 1585 ntBASIC20.56■□□□□ 0.88
CCDC66A2RUB6 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 GPX1P1-201ENST00000388829 606 ntBASIC20.56■□□□□ 0.88
CCDC66A2RUB6 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 AL137784.2-201ENST00000607332 1000 ntBASIC20.56■□□□□ 0.88
CCDC66A2RUB6 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC66A2RUB6 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC66A2RUB6 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC66A2RUB6 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
CCDC66A2RUB6 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC66A2RUB6 LINC01465-201ENST00000408887 1940 ntBASIC20.55■□□□□ 0.88
CCDC66A2RUB6 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC66A2RUB6 AC004911.1-201ENST00000416316 871 ntBASIC20.55■□□□□ 0.88
CCDC66A2RUB6 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC66A2RUB6 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC66A2RUB6 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
CCDC66A2RUB6 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.55■□□□□ 0.88
CCDC66A2RUB6 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC66A2RUB6 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC66A2RUB6 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC66A2RUB6 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC66A2RUB6 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.55■□□□□ 0.88
CCDC66A2RUB6 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC66A2RUB6 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC66A2RUB6 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC66A2RUB6 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CCDC66A2RUB6 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC66A2RUB6 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC66A2RUB6 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC66A2RUB6 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC66A2RUB6 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CCDC66A2RUB6 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
CCDC66A2RUB6 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC66A2RUB6 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms