Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 MIR15A-201ENST00000607334 83 ntBASIC5.26□□□□□ -1.57
TRERF1Q96PN7 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
TRERF1Q96PN7 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.26□□□□□ -1.57
TRERF1Q96PN7 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.26□□□□□ -1.57
TRERF1Q96PN7 AC009951.1-201ENST00000623674 2614 ntBASIC5.26□□□□□ -1.57
TRERF1Q96PN7 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC5.26□□□□□ -1.57
TRERF1Q96PN7 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
TRERF1Q96PN7 AC097461.1-201ENST00000568928 2821 ntBASIC5.25□□□□□ -1.57
TRERF1Q96PN7 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
TRERF1Q96PN7 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.25□□□□□ -1.57
TRERF1Q96PN7 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC5.25□□□□□ -1.57
TRERF1Q96PN7 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
TRERF1Q96PN7 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC5.25□□□□□ -1.57
TRERF1Q96PN7 RNU6-417P-201ENST00000384712 107 ntBASIC5.25□□□□□ -1.57
TRERF1Q96PN7 SNORA53-201ENST00000391141 249 ntBASIC5.25□□□□□ -1.57
TRERF1Q96PN7 RNU6-918P-201ENST00000391219 106 ntBASIC5.25□□□□□ -1.57
TRERF1Q96PN7 RPL21P75-201ENST00000396599 483 ntBASIC5.25□□□□□ -1.57
TRERF1Q96PN7 SDHCP2-201ENST00000398565 501 ntBASIC5.25□□□□□ -1.57
TRERF1Q96PN7 RPL21P28-201ENST00000401418 483 ntBASIC5.25□□□□□ -1.57
TRERF1Q96PN7 RPL19P1-201ENST00000411635 428 ntBASIC5.25□□□□□ -1.57
TRERF1Q96PN7 BMS1P22-201ENST00000414726 313 ntBASIC5.25□□□□□ -1.57
TRERF1Q96PN7 AL590556.1-201ENST00000423231 483 ntBASIC5.25□□□□□ -1.57
TRERF1Q96PN7 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC5.25□□□□□ -1.57
TRERF1Q96PN7 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.25□□□□□ -1.57
TRERF1Q96PN7 RPL21P11-201ENST00000461458 483 ntBASIC5.25□□□□□ -1.57
TRERF1Q96PN7 RPL21P39-201ENST00000463605 483 ntBASIC5.25□□□□□ -1.57
TRERF1Q96PN7 AC132942.1-201ENST00000486753 483 ntBASIC5.25□□□□□ -1.57
TRERF1Q96PN7 AC093591.1-201ENST00000491435 481 ntBASIC5.25□□□□□ -1.57
TRERF1Q96PN7 RPL21P16-201ENST00000495531 483 ntBASIC5.25□□□□□ -1.57
TRERF1Q96PN7 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC5.25□□□□□ -1.57
TRERF1Q96PN7 AC015795.1-201ENST00000513669 327 ntBASIC5.25□□□□□ -1.57
TRERF1Q96PN7 RNU6-352P-201ENST00000516908 107 ntBASIC5.25□□□□□ -1.57
TRERF1Q96PN7 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.25□□□□□ -1.57
TRERF1Q96PN7 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.25□□□□□ -1.57
TRERF1Q96PN7 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC5.25□□□□□ -1.57
TRERF1Q96PN7 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
TRERF1Q96PN7 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.24□□□□□ -1.57
TRERF1Q96PN7 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.24□□□□□ -1.57
TRERF1Q96PN7 MTND5P9-201ENST00000503854 1755 ntBASIC5.24□□□□□ -1.57
TRERF1Q96PN7 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
TRERF1Q96PN7 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC5.24□□□□□ -1.57
TRERF1Q96PN7 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
TRERF1Q96PN7 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
TRERF1Q96PN7 AC107068.1-201ENST00000563286 4218 ntBASIC5.24□□□□□ -1.57
TRERF1Q96PN7 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.24□□□□□ -1.57
TRERF1Q96PN7 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.24□□□□□ -1.57
TRERF1Q96PN7 RNU6-290P-201ENST00000365212 101 ntBASIC5.24□□□□□ -1.57
TRERF1Q96PN7 Y_RNA.358-201ENST00000365491 99 ntBASIC5.24□□□□□ -1.57
TRERF1Q96PN7 RNU4-78P-201ENST00000410940 126 ntBASIC5.24□□□□□ -1.57
TRERF1Q96PN7 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.24□□□□□ -1.57
TRERF1Q96PN7 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC5.24□□□□□ -1.57
TRERF1Q96PN7 HSPE1P25-201ENST00000455484 251 ntBASIC5.24□□□□□ -1.57
TRERF1Q96PN7 AC133134.1-201ENST00000466800 359 ntBASIC5.24□□□□□ -1.57
TRERF1Q96PN7 HMGB1P25-201ENST00000468402 607 ntBASIC5.24□□□□□ -1.57
TRERF1Q96PN7 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC5.24□□□□□ -1.57
TRERF1Q96PN7 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
TRERF1Q96PN7 AC023824.2-201ENST00000566185 400 ntBASIC5.24□□□□□ -1.57
TRERF1Q96PN7 LRRC37A5P-203ENST00000580181 585 ntBASIC5.24□□□□□ -1.57
TRERF1Q96PN7 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC5.24□□□□□ -1.57
TRERF1Q96PN7 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC5.24□□□□□ -1.57
TRERF1Q96PN7 AC007785.2-201ENST00000598627 1916 ntBASIC5.24□□□□□ -1.57
TRERF1Q96PN7 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.24□□□□□ -1.57
TRERF1Q96PN7 AL592182.3-201ENST00000642132 3304 ntBASIC5.24□□□□□ -1.57
TRERF1Q96PN7 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC5.24□□□□□ -1.57
TRERF1Q96PN7 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
TRERF1Q96PN7 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 DDX10P1-201ENST00000448545 1933 ntBASIC5.23□□□□□ -1.57
TRERF1Q96PN7 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 RNU6-146P-201ENST00000384602 108 ntBASIC5.23□□□□□ -1.57
TRERF1Q96PN7 TMSB10P2-201ENST00000416049 131 ntBASIC5.23□□□□□ -1.57
TRERF1Q96PN7 EI24P1-201ENST00000416584 867 ntBASIC5.23□□□□□ -1.57
TRERF1Q96PN7 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 CKS1BP6-201ENST00000424932 240 ntBASIC5.23□□□□□ -1.57
TRERF1Q96PN7 RPS12P10-201ENST00000427031 377 ntBASIC5.23□□□□□ -1.57
TRERF1Q96PN7 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 AC010618.1-201ENST00000469924 477 ntBASIC5.23□□□□□ -1.57
TRERF1Q96PN7 AC109327.1-201ENST00000471666 403 ntBASIC5.23□□□□□ -1.57
TRERF1Q96PN7 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 AC107918.3-201ENST00000533272 382 ntBASIC5.23□□□□□ -1.57
TRERF1Q96PN7 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 MDM2-232ENST00000544561 213 ntTSL 5 BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 RPL23AP87-202ENST00000573039 466 ntBASIC5.23□□□□□ -1.57
TRERF1Q96PN7 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 AC023575.1-201ENST00000580510 358 ntBASIC5.23□□□□□ -1.57
TRERF1Q96PN7 BRDTP1-201ENST00000605735 677 ntBASIC5.23□□□□□ -1.57
TRERF1Q96PN7 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC5.23□□□□□ -1.57
TRERF1Q96PN7 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms