RNA–Protein interactions for RNA: ENST00000468402.1

HMGB1P25-201, Transcript of high mobility group box 1 pseudogene 25, humanhuman

BASIC

Gene HMGB1P25, Length 607 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P25-201ENST00000468402 AEBP2Q6ZN18 517 aaPredicted RBP15.92■□□□□ 0.14
HMGB1P25-201ENST00000468402 CHIC1Q5VXU3 224 aa15.13■□□□□ 0.01
HMGB1P25-201ENST00000468402 SENP3Q9H4L4 574 aaPredicted RBP13.81□□□□□ -0.2
HMGB1P25-201ENST00000468402 PHF23Q9BUL5 403 aaPredicted RBP13.55□□□□□ -0.24
HMGB1P25-201ENST00000468402 FOXD1Q16676 465 aa12.8□□□□□ -0.36
HMGB1P25-201ENST00000468402 POTEDQ86YR6 584 aa12.26□□□□□ -0.45
HMGB1P25-201ENST00000468402 MSH5O43196 834 aa12.2□□□□□ -0.46
HMGB1P25-201ENST00000468402 PIAS4Q8N2W9 510 aaPredicted RBP12.08□□□□□ -0.48
HMGB1P25-201ENST00000468402 PLPPR3Q6T4P5 718 aa11.94□□□□□ -0.5
HMGB1P25-201ENST00000468402 ADRA2BP18089 450 aa11.79□□□□□ -0.52
HMGB1P25-201ENST00000468402 PPP6R1Q9UPN7 881 aa11.72□□□□□ -0.53
HMGB1P25-201ENST00000468402 SCAF1Q9H7N4 1312 aaKnown RBP10.92□□□□□ -0.66
HMGB1P25-201ENST00000468402 MAPK8IP2Q13387 824 aaPredicted RBP10.88□□□□□ -0.67
HMGB1P25-201ENST00000468402 DMRT2Q9Y5R5 561 aa10.82□□□□□ -0.68
HMGB1P25-201ENST00000468402 DCAF8L1A6NGE4 600 aa10.78□□□□□ -0.68
HMGB1P25-201ENST00000468402 CACNB1Q02641 598 aaPredicted RBP10.75□□□□□ -0.69
HMGB1P25-201ENST00000468402 PPP4R3CPQ6ZMV5 832 aa10.41□□□□□ -0.74
HMGB1P25-201ENST00000468402 CNKSR2Q8WXI2 1034 aa10.28□□□□□ -0.76
HMGB1P25-201ENST00000468402 RNF39Q9H2S5 420 aa10.26□□□□□ -0.77
HMGB1P25-201ENST00000468402 HOXD11P31277 338 aaPredicted RBP10.25□□□□□ -0.77
HMGB1P25-201ENST00000468402 RNF216Q9NWF9 866 aaPredicted RBP10.2□□□□□ -0.78
HMGB1P25-201ENST00000468402 C1QBPQ07021 282 aaKnown RBP10.18□□□□□ -0.78
HMGB1P25-201ENST00000468402 EHMT2Q96KQ7 1210 aa10.15□□□□□ -0.78
HMGB1P25-201ENST00000468402 KCNA4P22459 653 aa10.1□□□□□ -0.79
HMGB1P25-201ENST00000468402 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.08□□□□□ -0.8
HMGB1P25-201ENST00000468402 NCBP3Q53F19 620 aaKnown RBP10.06□□□□□ -0.8
HMGB1P25-201ENST00000468402 DNAJC5BQ9UF47 199 aa9.87□□□□□ -0.83
HMGB1P25-201ENST00000468402 CAPN15O75808 1086 aa9.8□□□□□ -0.84
HMGB1P25-201ENST00000468402 SLC4A1APQ9BWU0 796 aaKnown RBP9.76□□□□□ -0.85
HMGB1P25-201ENST00000468402 NPM3O75607 178 aaKnown RBP9.74□□□□□ -0.85
HMGB1P25-201ENST00000468402 CSRNP3Q8WYN3 585 aa9.66□□□□□ -0.86
HMGB1P25-201ENST00000468402 POTEHQ6S545 545 aa9.63□□□□□ -0.87
HMGB1P25-201ENST00000468402 SPINK5Q9NQ38 1064 aaPredicted RBP9.61□□□□□ -0.87
HMGB1P25-201ENST00000468402 U3KPZ7 1027 aaPredicted RBP9.61□□□□□ -0.87
HMGB1P25-201ENST00000468402 TRHP20396 242 aaPredicted RBP9.58□□□□□ -0.88
HMGB1P25-201ENST00000468402 APLP2Q06481 763 aa9.56□□□□□ -0.88
HMGB1P25-201ENST00000468402 DSG3P32926 999 aa9.55□□□□□ -0.88
HMGB1P25-201ENST00000468402 ABCB7O75027 752 aa9.5□□□□□ -0.89
HMGB1P25-201ENST00000468402 ZNF219Q9P2Y4 722 aaPredicted RBP9.46□□□□□ -0.9
HMGB1P25-201ENST00000468402 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.43□□□□□ -0.9
HMGB1P25-201ENST00000468402 HNRNPUL2Q1KMD3 747 aaKnown RBP9.43□□□□□ -0.9
HMGB1P25-201ENST00000468402 SAMD1Q6SPF0 538 aaPredicted RBP9.32□□□□□ -0.92
HMGB1P25-201ENST00000468402 SLC4A2P04920 1241 aa9.28□□□□□ -0.92
HMGB1P25-201ENST00000468402 RBM42Q9BTD8 480 aaKnown RBP9.28□□□□□ -0.92
HMGB1P25-201ENST00000468402 ZBTB22O15209 634 aa9.25□□□□□ -0.93
HMGB1P25-201ENST00000468402 POLA2Q14181 598 aa9.15□□□□□ -0.94
HMGB1P25-201ENST00000468402 FOXD4L1Q9NU39 408 aa9.14□□□□□ -0.95
HMGB1P25-201ENST00000468402 CHRDL2Q6WN34 429 aa9.12□□□□□ -0.95
HMGB1P25-201ENST00000468402 MYCNP04198 464 aaPredicted RBP9.1□□□□□ -0.95
HMGB1P25-201ENST00000468402 ZBTB12Q9Y330 459 aaPredicted RBP8.98□□□□□ -0.97
HMGB1P25-201ENST00000468402 SLC24A1O60721 1099 aa8.93□□□□□ -0.98
HMGB1P25-201ENST00000468402 AKT1S1Q96B36 256 aa8.93□□□□□ -0.98
HMGB1P25-201ENST00000468402 HAX1O00165 279 aa8.9□□□□□ -0.98
HMGB1P25-201ENST00000468402 AMER1Q5JTC6 1135 aaPredicted RBP8.9□□□□□ -0.98
HMGB1P25-201ENST00000468402 SP7Q8TDD2 431 aaPredicted RBP8.9□□□□□ -0.98
HMGB1P25-201ENST00000468402 RTN4Q9NQC3 1192 aaKnown RBP8.9□□□□□ -0.98
HMGB1P25-201ENST00000468402 OSCARQ8IYS5 282 aa8.87□□□□□ -0.99
HMGB1P25-201ENST00000468402 REM2Q8IYK8 340 aaPredicted RBP8.84□□□□□ -0.99
HMGB1P25-201ENST00000468402 PIP4P2Q8N4L2 257 aa8.8□□□□□ -1
HMGB1P25-201ENST00000468402 ATF5Q9Y2D1 282 aaPredicted RBP8.79□□□□□ -1
HMGB1P25-201ENST00000468402 FKBP8Q14318 412 aa8.78□□□□□ -1
HMGB1P25-201ENST00000468402 PITPNM1O00562 1244 aa8.75□□□□□ -1.01
HMGB1P25-201ENST00000468402 CLEC11AQ9Y240 323 aa8.74□□□□□ -1.01
HMGB1P25-201ENST00000468402 ATXN8OSP0DMR3 200 aa8.73□□□□□ -1.01
HMGB1P25-201ENST00000468402 FBLN2P98095 1184 aa8.73□□□□□ -1.01
HMGB1P25-201ENST00000468402 FXR2P51116 673 aaKnown RBP eCLIP8.63□□□□□ -1.03
HMGB1P25-201ENST00000468402 SPDYE2BA6NHP3 402 aa8.61□□□□□ -1.03
HMGB1P25-201ENST00000468402 SPDYE6P0CI01 402 aa8.61□□□□□ -1.03
HMGB1P25-201ENST00000468402 PRKAR2AP13861 404 aaKnown RBP8.61□□□□□ -1.03
HMGB1P25-201ENST00000468402 SPDYE2Q495Y8 402 aa8.61□□□□□ -1.03
HMGB1P25-201ENST00000468402 SPDYE1Q8NFV5 336 aaPredicted RBP8.59□□□□□ -1.03
HMGB1P25-201ENST00000468402 ZNF692Q9BU19 519 aaPredicted RBP8.57□□□□□ -1.04
HMGB1P25-201ENST00000468402 EVX2Q03828 476 aa8.5□□□□□ -1.05
HMGB1P25-201ENST00000468402 PRR29P0C7W0 189 aa8.48□□□□□ -1.05
HMGB1P25-201ENST00000468402 CHADLQ6NUI6 762 aa8.45□□□□□ -1.06
HMGB1P25-201ENST00000468402 PABPN1Q86U42 306 aaKnown RBP eCLIP8.4□□□□□ -1.06
HMGB1P25-201ENST00000468402 GABBR2O75899 941 aa8.39□□□□□ -1.07
HMGB1P25-201ENST00000468402 C19orf67A6NJJ6 358 aa8.38□□□□□ -1.07
HMGB1P25-201ENST00000468402 LHX8Q68G74 356 aa8.38□□□□□ -1.07
HMGB1P25-201ENST00000468402 SSUH2Q9Y2M2 353 aa8.34□□□□□ -1.07
HMGB1P25-201ENST00000468402 CD44P16070 742 aaKnown RBP8.33□□□□□ -1.08
HMGB1P25-201ENST00000468402 MKRN4PQ13434 485 aaPredicted RBP8.33□□□□□ -1.08
HMGB1P25-201ENST00000468402 DCBLD2Q96PD2 775 aa8.31□□□□□ -1.08
HMGB1P25-201ENST00000468402 FBXO3Q9UK99 471 aa8.31□□□□□ -1.08
HMGB1P25-201ENST00000468402 PLSCR2Q9NRY7 297 aa8.28□□□□□ -1.08
HMGB1P25-201ENST00000468402 DCAF8L2P0C7V8 631 aa8.26□□□□□ -1.09
HMGB1P25-201ENST00000468402 SPDYE4A6NLX3 237 aa8.25□□□□□ -1.09
HMGB1P25-201ENST00000468402 FARP1Q9Y4F1 1045 aaPredicted RBP8.25□□□□□ -1.09
HMGB1P25-201ENST00000468402 PAK3O75914 559 aaPredicted RBP8.21□□□□□ -1.1
HMGB1P25-201ENST00000468402 ZRANB1Q9UGI0 708 aa8.2□□□□□ -1.1
HMGB1P25-201ENST00000468402 PLCB2Q00722 1185 aa8.19□□□□□ -1.1
HMGB1P25-201ENST00000468402 CLCN6P51797 869 aa8.17□□□□□ -1.1
HMGB1P25-201ENST00000468402 HAP1P54257 671 aaPredicted RBP8.17□□□□□ -1.1
HMGB1P25-201ENST00000468402 VASPP50552 380 aaPredicted RBP8.15□□□□□ -1.1
HMGB1P25-201ENST00000468402 STAG3Q9UJ98 1225 aa8.13□□□□□ -1.11
HMGB1P25-201ENST00000468402 POTEIP0CG38 1075 aa8.08□□□□□ -1.12
HMGB1P25-201ENST00000468402 IFNLR1Q8IU57 520 aaPredicted RBP8.07□□□□□ -1.12
HMGB1P25-201ENST00000468402 ZNF579Q8NAF0 562 aaKnown RBP8.06□□□□□ -1.12
HMGB1P25-201ENST00000468402 NPM1P06748 294 aaKnown RBP eCLIP8.05□□□□□ -1.12
HMGB1P25-201ENST00000468402 PROM2Q8N271 834 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 118.7 ms