Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC114786.4-201ENST00000508771 728 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 AC098591.2-201ENST00000510152 315 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 RNU4-29P-201ENST00000515943 174 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.95□□□□□ -1.94
HOXA1P49639 HIGD1AP5-201ENST00000529959 259 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 MEG8-215ENST00000555354 469 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXA1P49639 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXA1P49639 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXA1P49639 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXA1P49639 AC015917.1-201ENST00000579654 510 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC2.95□□□□□ -1.94
HOXA1P49639 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXA1P49639 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXA1P49639 MIR6867-201ENST00000610636 67 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 AC007998.5-201ENST00000622938 237 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 AC090617.7-201ENST00000623952 126 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 AC090617.10-201ENST00000624308 134 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXA1P49639 AP000553.6-201ENST00000641242 118 ntBASIC2.95□□□□□ -1.94
HOXA1P49639 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
HOXA1P49639 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.95□□□□□ -1.94
HOXA1P49639 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
HOXA1P49639 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HOXA1P49639 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXA1P49639 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXA1P49639 HSPA8P4-201ENST00000511877 1920 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
HOXA1P49639 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HOXA1P49639 RNU6-512P-201ENST00000364438 103 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 RN7SKP227-201ENST00000364445 330 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 RNU4-66P-201ENST00000365199 138 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
HOXA1P49639 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXA1P49639 RNA5SP111-201ENST00000411386 101 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXA1P49639 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXA1P49639 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXA1P49639 AC007919.1-201ENST00000429380 217 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 AL591212.2-201ENST00000433923 257 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXA1P49639 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXA1P49639 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXA1P49639 RNU7-180P-201ENST00000459240 63 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXA1P49639 AC026979.1-201ENST00000492525 396 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXA1P49639 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXA1P49639 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXA1P49639 SNORA31.3-201ENST00000516029 96 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 RNU6-352P-201ENST00000516908 107 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXA1P49639 CENPUP1-201ENST00000526649 1202 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXA1P49639 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXA1P49639 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXA1P49639 AC002545.1-201ENST00000592511 181 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXA1P49639 NRBF2P5-201ENST00000603087 788 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 BNIP3P9-201ENST00000603714 553 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 AC104763.2-201ENST00000604179 382 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 AC013553.2-201ENST00000604244 589 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 AL591034.3-201ENST00000605511 685 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 AC022893.3-201ENST00000607665 437 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 AL365204.3-201ENST00000612448 685 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HOXA1P49639 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXA1P49639 AC006504.8-201ENST00000621046 635 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 AC005858.4-201ENST00000623191 700 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXA1P49639 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXA1P49639 MTND5P42-201ENST00000637720 498 ntBASIC2.94□□□□□ -1.94
HOXA1P49639 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HOXA1P49639 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXA1P49639 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HOXA1P49639 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXA1P49639 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
HOXA1P49639 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
HOXA1P49639 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXA1P49639 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
HOXA1P49639 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXA1P49639 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXA1P49639 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXA1P49639 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC2.93□□□□□ -1.94
HOXA1P49639 AL139276.1-201ENST00000311910 1001 ntBASIC2.93□□□□□ -1.94
HOXA1P49639 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
HOXA1P49639 RNU6-38P-201ENST00000384085 107 ntBASIC2.93□□□□□ -1.94
HOXA1P49639 RNU1-101P-201ENST00000391171 127 ntBASIC2.93□□□□□ -1.94
HOXA1P49639 RNA5SP129-201ENST00000410276 118 ntBASIC2.93□□□□□ -1.94
HOXA1P49639 RAB28P1-201ENST00000411517 641 ntBASIC2.93□□□□□ -1.94
HOXA1P49639 AL513331.1-201ENST00000411908 397 ntBASIC2.93□□□□□ -1.94
HOXA1P49639 RPS12P24-201ENST00000412619 387 ntBASIC2.93□□□□□ -1.94
HOXA1P49639 OR6C66P-201ENST00000414917 930 ntBASIC2.93□□□□□ -1.94
HOXA1P49639 CRYBB2P1-203ENST00000415709 538 ntBASIC2.93□□□□□ -1.94
HOXA1P49639 AL451062.2-201ENST00000427515 271 ntBASIC2.93□□□□□ -1.94
HOXA1P49639 RPL36AP6-201ENST00000435770 321 ntBASIC2.93□□□□□ -1.94
HOXA1P49639 PRDX3P3-201ENST00000447765 522 ntBASIC2.93□□□□□ -1.94
HOXA1P49639 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXA1P49639 RNU6-333P-201ENST00000459117 107 ntBASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms