Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.05
MSH5O43196 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
MSH5O43196 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC8.51□□□□□ -1.05
MSH5O43196 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.05
MSH5O43196 AC010329.1-201ENST00000593903 8328 ntBASIC8.51□□□□□ -1.05
MSH5O43196 RNU6-471P-201ENST00000383944 106 ntBASIC8.51□□□□□ -1.05
MSH5O43196 MIR9-2-201ENST00000384838 87 ntBASIC8.51□□□□□ -1.05
MSH5O43196 SNORA17A-201ENST00000391185 133 ntBASIC8.51□□□□□ -1.05
MSH5O43196 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC8.51□□□□□ -1.05
MSH5O43196 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC8.51□□□□□ -1.05
MSH5O43196 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC8.51□□□□□ -1.05
MSH5O43196 CYCSP38-201ENST00000559840 322 ntBASIC8.51□□□□□ -1.05
MSH5O43196 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC8.51□□□□□ -1.05
MSH5O43196 AC140658.3-201ENST00000567603 271 ntBASIC8.51□□□□□ -1.05
MSH5O43196 AL929325.1-201ENST00000603096 117 ntBASIC8.51□□□□□ -1.05
MSH5O43196 SNORA17.5-201ENST00000630429 132 ntBASIC8.51□□□□□ -1.05
MSH5O43196 MIR203B-201ENST00000636080 86 ntBASIC8.51□□□□□ -1.05
MSH5O43196 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC8.51□□□□□ -1.05
MSH5O43196 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC8.51□□□□□ -1.05
MSH5O43196 AC140134.1-201ENST00000511830 3544 ntBASIC8.51□□□□□ -1.05
MSH5O43196 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
MSH5O43196 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC8.51□□□□□ -1.05
MSH5O43196 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC8.51□□□□□ -1.05
MSH5O43196 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.05
MSH5O43196 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
MSH5O43196 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC8.5□□□□□ -1.05
MSH5O43196 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
MSH5O43196 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
MSH5O43196 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC8.5□□□□□ -1.05
MSH5O43196 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
MSH5O43196 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC8.5□□□□□ -1.05
MSH5O43196 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC8.5□□□□□ -1.05
MSH5O43196 RNU4-67P-201ENST00000364569 141 ntBASIC8.5□□□□□ -1.05
MSH5O43196 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC8.5□□□□□ -1.05
MSH5O43196 RNU6-1307P-201ENST00000391012 103 ntBASIC8.5□□□□□ -1.05
MSH5O43196 U3.26-201ENST00000391236 204 ntBASIC8.5□□□□□ -1.05
MSH5O43196 AC007568.1-201ENST00000422912 471 ntBASIC8.5□□□□□ -1.05
MSH5O43196 AL133244.1-201ENST00000456007 258 ntBASIC8.5□□□□□ -1.05
MSH5O43196 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC8.5□□□□□ -1.05
MSH5O43196 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC8.5□□□□□ -1.05
MSH5O43196 COX6B1P2-201ENST00000489624 230 ntBASIC8.5□□□□□ -1.05
MSH5O43196 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC8.5□□□□□ -1.05
MSH5O43196 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
MSH5O43196 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC8.5□□□□□ -1.05
MSH5O43196 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
MSH5O43196 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC8.5□□□□□ -1.05
MSH5O43196 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC8.5□□□□□ -1.05
MSH5O43196 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
MSH5O43196 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC8.5□□□□□ -1.05
MSH5O43196 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC8.5□□□□□ -1.05
MSH5O43196 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
MSH5O43196 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
MSH5O43196 MARK2P15-201ENST00000432204 2186 ntBASIC8.49□□□□□ -1.05
MSH5O43196 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC8.49□□□□□ -1.05
MSH5O43196 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC8.49□□□□□ -1.05
MSH5O43196 SNORD114-7-201ENST00000362520 77 ntBASIC8.49□□□□□ -1.05
MSH5O43196 SNORD77.3-201ENST00000391113 65 ntBASIC8.49□□□□□ -1.05
MSH5O43196 MIR873-201ENST00000401120 77 ntBASIC8.49□□□□□ -1.05
MSH5O43196 RNU6-712P-201ENST00000410558 100 ntBASIC8.49□□□□□ -1.05
MSH5O43196 AC245291.1-201ENST00000419501 328 ntBASIC8.49□□□□□ -1.05
MSH5O43196 RN7SKP35-201ENST00000517210 151 ntBASIC8.49□□□□□ -1.05
MSH5O43196 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC8.49□□□□□ -1.05
MSH5O43196 AC087741.2-201ENST00000619415 172 ntBASIC8.49□□□□□ -1.05
MSH5O43196 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
MSH5O43196 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC8.49□□□□□ -1.05
MSH5O43196 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC8.49□□□□□ -1.05
MSH5O43196 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC8.49□□□□□ -1.05
MSH5O43196 SNTN-203ENST00000496807 3746 ntTSL 4 BASIC8.49□□□□□ -1.05
MSH5O43196 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC8.48□□□□□ -1.05
MSH5O43196 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
MSH5O43196 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
MSH5O43196 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
MSH5O43196 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
MSH5O43196 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC8.48□□□□□ -1.05
MSH5O43196 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
MSH5O43196 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
MSH5O43196 PNKDP1-201ENST00000435914 430 ntBASIC8.48□□□□□ -1.05
MSH5O43196 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC8.48□□□□□ -1.05
MSH5O43196 HLA-DPA3-207ENST00000454398 229 ntBASIC8.48□□□□□ -1.05
MSH5O43196 SCARNA18B-201ENST00000458806 135 ntBASIC8.48□□□□□ -1.05
MSH5O43196 RPL23AP14-201ENST00000468281 468 ntBASIC8.48□□□□□ -1.05
MSH5O43196 SSX6-203ENST00000509958 336 ntTSL 3 BASIC8.48□□□□□ -1.05
MSH5O43196 RNA5SP418-201ENST00000515951 117 ntBASIC8.48□□□□□ -1.05
MSH5O43196 AC079905.1-201ENST00000549280 475 ntBASIC8.48□□□□□ -1.05
MSH5O43196 CYCSP39-201ENST00000565821 309 ntBASIC8.48□□□□□ -1.05
MSH5O43196 MIR3529-201ENST00000637713 78 ntBASIC8.48□□□□□ -1.05
MSH5O43196 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC8.48□□□□□ -1.05
MSH5O43196 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
MSH5O43196 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
MSH5O43196 DCN-218ENST00000551354 2924 ntTSL 3 BASIC8.48□□□□□ -1.05
MSH5O43196 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC8.48□□□□□ -1.05
MSH5O43196 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC8.47□□□□□ -1.05
MSH5O43196 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC8.47□□□□□ -1.05
MSH5O43196 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
MSH5O43196 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC8.47□□□□□ -1.05
MSH5O43196 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC8.47□□□□□ -1.05
MSH5O43196 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
MSH5O43196 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC8.47□□□□□ -1.05
MSH5O43196 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC8.47□□□□□ -1.05
MSH5O43196 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC8.47□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 141.5 ms