Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
PCDHA3Q9Y5H8 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHA3Q9Y5H8 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
PCDHA3Q9Y5H8 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
PCDHA3Q9Y5H8 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHA3Q9Y5H8 AC135050.7-201ENST00000624508 2218 ntBASIC19.93■□□□□ 0.78
PCDHA3Q9Y5H8 TSPY23P-201ENST00000440136 739 ntBASIC19.93■□□□□ 0.78
PCDHA3Q9Y5H8 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.93■□□□□ 0.78
PCDHA3Q9Y5H8 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHA3Q9Y5H8 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHA3Q9Y5H8 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHA3Q9Y5H8 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHA3Q9Y5H8 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
PCDHA3Q9Y5H8 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.93■□□□□ 0.78
PCDHA3Q9Y5H8 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.93■□□□□ 0.78
PCDHA3Q9Y5H8 ANO7L1-203ENST00000602586 1720 ntBASIC19.93■□□□□ 0.78
PCDHA3Q9Y5H8 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHA3Q9Y5H8 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHA3Q9Y5H8 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.93■□□□□ 0.78
PCDHA3Q9Y5H8 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.92■□□□□ 0.78
PCDHA3Q9Y5H8 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 AC090192.1-201ENST00000517740 490 ntBASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 AC004264.1-201ENST00000608354 794 ntBASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 LETM1P2-201ENST00000597330 2178 ntBASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 AC026471.1-201ENST00000564629 3026 ntBASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.91■□□□□ 0.78
PCDHA3Q9Y5H8 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.9■□□□□ 0.78
PCDHA3Q9Y5H8 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHA3Q9Y5H8 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
PCDHA3Q9Y5H8 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.9■□□□□ 0.78
PCDHA3Q9Y5H8 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
PCDHA3Q9Y5H8 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
PCDHA3Q9Y5H8 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.9■□□□□ 0.78
PCDHA3Q9Y5H8 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDHA3Q9Y5H8 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.9■□□□□ 0.78
PCDHA3Q9Y5H8 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms