Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NOD1Q9Y239 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NOD1Q9Y239 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NOD1Q9Y239 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NOD1Q9Y239 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NOD1Q9Y239 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
NOD1Q9Y239 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC21.01■□□□□ 0.95
NOD1Q9Y239 ZNF815P-204ENST00000434898 1737 ntBASIC21.01■□□□□ 0.95
NOD1Q9Y239 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC21.01■□□□□ 0.95
NOD1Q9Y239 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC21■□□□□ 0.95
NOD1Q9Y239 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC21■□□□□ 0.95
NOD1Q9Y239 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NOD1Q9Y239 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
NOD1Q9Y239 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NOD1Q9Y239 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NOD1Q9Y239 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC21■□□□□ 0.95
NOD1Q9Y239 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC21■□□□□ 0.95
NOD1Q9Y239 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NOD1Q9Y239 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NOD1Q9Y239 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21■□□□□ 0.95
NOD1Q9Y239 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21■□□□□ 0.95
NOD1Q9Y239 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21■□□□□ 0.95
NOD1Q9Y239 RASA4DP-201ENST00000460726 1199 ntBASIC21■□□□□ 0.95
NOD1Q9Y239 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC21■□□□□ 0.95
NOD1Q9Y239 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC21■□□□□ 0.95
NOD1Q9Y239 AC012313.10-201ENST00000623509 926 ntBASIC21■□□□□ 0.95
NOD1Q9Y239 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21■□□□□ 0.95
NOD1Q9Y239 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC21■□□□□ 0.95
NOD1Q9Y239 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NOD1Q9Y239 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21■□□□□ 0.95
NOD1Q9Y239 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NOD1Q9Y239 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
NOD1Q9Y239 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NOD1Q9Y239 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NOD1Q9Y239 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
NOD1Q9Y239 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NOD1Q9Y239 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NOD1Q9Y239 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.99■□□□□ 0.95
NOD1Q9Y239 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.99■□□□□ 0.95
NOD1Q9Y239 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NOD1Q9Y239 HBZP1-201ENST00000354915 429 ntBASIC20.99■□□□□ 0.95
NOD1Q9Y239 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NOD1Q9Y239 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NOD1Q9Y239 TSPY21P-201ENST00000433481 731 ntBASIC20.99■□□□□ 0.95
NOD1Q9Y239 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.99■□□□□ 0.95
NOD1Q9Y239 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.99■□□□□ 0.95
NOD1Q9Y239 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NOD1Q9Y239 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
NOD1Q9Y239 AL162377.1-201ENST00000618844 1793 ntBASIC20.99■□□□□ 0.95
NOD1Q9Y239 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
NOD1Q9Y239 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NOD1Q9Y239 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
NOD1Q9Y239 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NOD1Q9Y239 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
NOD1Q9Y239 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NOD1Q9Y239 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
NOD1Q9Y239 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
NOD1Q9Y239 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NOD1Q9Y239 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
NOD1Q9Y239 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
NOD1Q9Y239 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NOD1Q9Y239 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
NOD1Q9Y239 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
NOD1Q9Y239 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NOD1Q9Y239 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NOD1Q9Y239 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NOD1Q9Y239 TSPY23P-201ENST00000440136 739 ntBASIC20.98■□□□□ 0.95
NOD1Q9Y239 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.98■□□□□ 0.95
NOD1Q9Y239 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.98■□□□□ 0.95
NOD1Q9Y239 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
NOD1Q9Y239 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.98■□□□□ 0.95
NOD1Q9Y239 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
NOD1Q9Y239 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
NOD1Q9Y239 AC092119.3-201ENST00000612618 583 ntBASIC20.98■□□□□ 0.95
NOD1Q9Y239 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NOD1Q9Y239 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NOD1Q9Y239 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.98■□□□□ 0.95
NOD1Q9Y239 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
NOD1Q9Y239 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
NOD1Q9Y239 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NOD1Q9Y239 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NOD1Q9Y239 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NOD1Q9Y239 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NOD1Q9Y239 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.97■□□□□ 0.95
NOD1Q9Y239 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
NOD1Q9Y239 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NOD1Q9Y239 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.97■□□□□ 0.95
NOD1Q9Y239 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.97■□□□□ 0.95
NOD1Q9Y239 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.97■□□□□ 0.95
NOD1Q9Y239 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
NOD1Q9Y239 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NOD1Q9Y239 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NOD1Q9Y239 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.97■□□□□ 0.95
NOD1Q9Y239 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.97■□□□□ 0.95
NOD1Q9Y239 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC20.97■□□□□ 0.95
NOD1Q9Y239 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20.97■□□□□ 0.95
NOD1Q9Y239 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.97■□□□□ 0.95
NOD1Q9Y239 AC024243.1-201ENST00000609234 778 ntBASIC20.97■□□□□ 0.95
NOD1Q9Y239 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NOD1Q9Y239 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms