Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NOTCH3Q9UM47 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 BID-203ENST00000399765 1879 ntTSL 2 BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 IPPK-202ENST00000375522 882 ntTSL 3 BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 TUBB8P6-201ENST00000436895 1288 ntBASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 VPS72-207ENST00000640458 689 ntTSL 5 BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 DERL1-203ENST00000419562 918 ntTSL 2 BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 ETFA-216ENST00000560726 942 ntTSL 3 BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 AC140113.3-201ENST00000605663 199 ntBASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC14.71□□□□□ -0.05
NOTCH3Q9UM47 AC005332.1-201ENST00000577698 1310 ntBASIC14.71□□□□□ -0.06
NOTCH3Q9UM47 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC14.71□□□□□ -0.06
NOTCH3Q9UM47 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
NOTCH3Q9UM47 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
NOTCH3Q9UM47 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
NOTCH3Q9UM47 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 NDUFV2-AS1-203ENST00000608008 779 ntBASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 AC008622.2-201ENST00000617006 1229 ntBASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 SLC25A1P2-201ENST00000430693 912 ntBASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 AL023973.1-201ENST00000624619 620 ntBASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
NOTCH3Q9UM47 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 DET1-207ENST00000564406 2315 ntTSL 2 BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 KRT16P6-202ENST00000425692 1426 ntBASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NOTCH3Q9UM47 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms