Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 MIR935-201ENST00000401179 91 ntBASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 AC142086.2-201ENST00000569753 217 ntBASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 AL109923.1-201ENST00000618799 583 ntBASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIMA1Q9UHB6 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMA1Q9UHB6 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 NBPF21P-201ENST00000425093 1451 ntBASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMA1Q9UHB6 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
LIMA1Q9UHB6 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LIMA1Q9UHB6 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMA1Q9UHB6 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMA1Q9UHB6 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC20.83■□□□□ 0.93
LIMA1Q9UHB6 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMA1Q9UHB6 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LIMA1Q9UHB6 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMA1Q9UHB6 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMA1Q9UHB6 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.83■□□□□ 0.93
LIMA1Q9UHB6 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMA1Q9UHB6 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMA1Q9UHB6 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMA1Q9UHB6 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.83■□□□□ 0.93
LIMA1Q9UHB6 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.83■□□□□ 0.93
LIMA1Q9UHB6 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMA1Q9UHB6 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMA1Q9UHB6 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
LIMA1Q9UHB6 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
LIMA1Q9UHB6 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.83■□□□□ 0.92
LIMA1Q9UHB6 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIMA1Q9UHB6 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIMA1Q9UHB6 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms