Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 AC093525.10-201ENST00000625130 1569 ntBASIC17.03■□□□□ 0.32
VSX1Q9NZR4 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
VSX1Q9NZR4 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VSX1Q9NZR4 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
VSX1Q9NZR4 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
VSX1Q9NZR4 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
VSX1Q9NZR4 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
VSX1Q9NZR4 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
VSX1Q9NZR4 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
VSX1Q9NZR4 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.02■□□□□ 0.31
VSX1Q9NZR4 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.02■□□□□ 0.31
VSX1Q9NZR4 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.02■□□□□ 0.31
VSX1Q9NZR4 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
VSX1Q9NZR4 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
VSX1Q9NZR4 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.02■□□□□ 0.31
VSX1Q9NZR4 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 AC239809.2-201ENST00000415381 517 ntBASIC17.01■□□□□ 0.31
VSX1Q9NZR4 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 KRT16P5-201ENST00000455284 522 ntBASIC17.01■□□□□ 0.31
VSX1Q9NZR4 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 AL023875.1-201ENST00000640777 796 ntBASIC17.01■□□□□ 0.31
VSX1Q9NZR4 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.01■□□□□ 0.31
VSX1Q9NZR4 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17■□□□□ 0.31
VSX1Q9NZR4 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17■□□□□ 0.31
VSX1Q9NZR4 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VSX1Q9NZR4 AL031598.1-201ENST00000561511 1773 ntBASIC17■□□□□ 0.31
VSX1Q9NZR4 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VSX1Q9NZR4 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VSX1Q9NZR4 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17■□□□□ 0.31
VSX1Q9NZR4 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms