Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 ME2-218ENST00000640965 2476 ntTSL 5 BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 GAD2-202ENST00000376248 680 ntTSL 5 BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 FXN-203ENST00000396366 922 ntTSL 2 BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 ZNF444P1-201ENST00000559497 298 ntBASIC22.54■■□□□ 1.2
DDX4Q9NQI0 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC22.54■■□□□ 1.2
DDX4Q9NQI0 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 VENTXP5-201ENST00000523979 775 ntBASIC22.53■■□□□ 1.2
DDX4Q9NQI0 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 AC093458.2-201ENST00000623150 629 ntBASIC22.53■■□□□ 1.2
DDX4Q9NQI0 LINC01311-201ENST00000565162 1445 ntBASIC22.53■■□□□ 1.2
DDX4Q9NQI0 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC22.53■■□□□ 1.2
DDX4Q9NQI0 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 TEX21P-204ENST00000641479 1693 ntBASIC22.52■■□□□ 1.2
DDX4Q9NQI0 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 Z82202.1-201ENST00000623446 1880 ntBASIC22.52■■□□□ 1.2
DDX4Q9NQI0 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC22.52■■□□□ 1.2
DDX4Q9NQI0 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC22.52■■□□□ 1.19
DDX4Q9NQI0 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
DDX4Q9NQI0 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
DDX4Q9NQI0 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
DDX4Q9NQI0 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
DDX4Q9NQI0 AC092597.1-201ENST00000487352 616 ntBASIC22.51■■□□□ 1.19
DDX4Q9NQI0 KRT18P56-201ENST00000507275 550 ntBASIC22.51■■□□□ 1.19
DDX4Q9NQI0 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC22.51■■□□□ 1.19
DDX4Q9NQI0 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC22.51■■□□□ 1.19
DDX4Q9NQI0 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC22.51■■□□□ 1.19
DDX4Q9NQI0 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
DDX4Q9NQI0 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC22.51■■□□□ 1.19
DDX4Q9NQI0 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
DDX4Q9NQI0 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC22.51■■□□□ 1.19
DDX4Q9NQI0 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
DDX4Q9NQI0 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
DDX4Q9NQI0 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC22.51■■□□□ 1.19
DDX4Q9NQI0 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
DDX4Q9NQI0 KRT8P3-201ENST00000519669 1449 ntBASIC22.5■■□□□ 1.19
DDX4Q9NQI0 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
DDX4Q9NQI0 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
DDX4Q9NQI0 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC22.5■■□□□ 1.19
DDX4Q9NQI0 TOLLIP-AS1-201ENST00000530897 939 ntBASIC22.5■■□□□ 1.19
DDX4Q9NQI0 AC024243.1-201ENST00000609234 778 ntBASIC22.5■■□□□ 1.19
DDX4Q9NQI0 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC22.5■■□□□ 1.19
DDX4Q9NQI0 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC22.5■■□□□ 1.19
DDX4Q9NQI0 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
DDX4Q9NQI0 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
DDX4Q9NQI0 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
DDX4Q9NQI0 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
DDX4Q9NQI0 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
DDX4Q9NQI0 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
DDX4Q9NQI0 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC22.5■■□□□ 1.19
DDX4Q9NQI0 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC22.49■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms