Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCDH9Q9HC56 FEM1AP3-201ENST00000403722 1741 ntBASIC19.71■□□□□ 0.75
PCDH9Q9HC56 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 GCSHP5-201ENST00000443090 522 ntBASIC19.7■□□□□ 0.74
PCDH9Q9HC56 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 KRT16P5-201ENST00000455284 522 ntBASIC19.7■□□□□ 0.74
PCDH9Q9HC56 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCDH9Q9HC56 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 AL158047.1-201ENST00000445918 881 ntBASIC19.69■□□□□ 0.74
PCDH9Q9HC56 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.69■□□□□ 0.74
PCDH9Q9HC56 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 AL512353.2-201ENST00000448759 1962 ntBASIC19.68■□□□□ 0.74
PCDH9Q9HC56 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDH9Q9HC56 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDH9Q9HC56 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms