Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
HIPK3Q9H422 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
HIPK3Q9H422 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.84■□□□□ 0.93
HIPK3Q9H422 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.84■□□□□ 0.93
HIPK3Q9H422 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.84■□□□□ 0.93
HIPK3Q9H422 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC20.84■□□□□ 0.93
HIPK3Q9H422 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HIPK3Q9H422 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
HIPK3Q9H422 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
HIPK3Q9H422 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
HIPK3Q9H422 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.84■□□□□ 0.93
HIPK3Q9H422 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
HIPK3Q9H422 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
HIPK3Q9H422 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HIPK3Q9H422 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.84■□□□□ 0.93
HIPK3Q9H422 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HIPK3Q9H422 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
HIPK3Q9H422 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
HIPK3Q9H422 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HIPK3Q9H422 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
HIPK3Q9H422 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HIPK3Q9H422 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HIPK3Q9H422 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HIPK3Q9H422 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HIPK3Q9H422 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HIPK3Q9H422 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.84■□□□□ 0.93
HIPK3Q9H422 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HIPK3Q9H422 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HIPK3Q9H422 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
HIPK3Q9H422 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
HIPK3Q9H422 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HIPK3Q9H422 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
HIPK3Q9H422 AC104417.2-201ENST00000562989 1793 ntBASIC20.83■□□□□ 0.93
HIPK3Q9H422 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HIPK3Q9H422 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HIPK3Q9H422 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HIPK3Q9H422 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.83■□□□□ 0.93
HIPK3Q9H422 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
HIPK3Q9H422 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.83■□□□□ 0.93
HIPK3Q9H422 CHCHD2P8-201ENST00000429873 447 ntBASIC20.83■□□□□ 0.93
HIPK3Q9H422 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.83■□□□□ 0.93
HIPK3Q9H422 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
HIPK3Q9H422 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.83■□□□□ 0.92
HIPK3Q9H422 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HIPK3Q9H422 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.83■□□□□ 0.92
HIPK3Q9H422 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.83■□□□□ 0.92
HIPK3Q9H422 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
HIPK3Q9H422 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.92
HIPK3Q9H422 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.82■□□□□ 0.92
HIPK3Q9H422 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HIPK3Q9H422 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HIPK3Q9H422 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HIPK3Q9H422 AC093525.10-201ENST00000625130 1569 ntBASIC20.82■□□□□ 0.92
HIPK3Q9H422 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HIPK3Q9H422 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
HIPK3Q9H422 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC20.82■□□□□ 0.92
HIPK3Q9H422 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
HIPK3Q9H422 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.82■□□□□ 0.92
HIPK3Q9H422 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
HIPK3Q9H422 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.82■□□□□ 0.92
HIPK3Q9H422 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.82■□□□□ 0.92
HIPK3Q9H422 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.82■□□□□ 0.92
HIPK3Q9H422 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HIPK3Q9H422 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
HIPK3Q9H422 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HIPK3Q9H422 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HIPK3Q9H422 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HIPK3Q9H422 KRT18P1-202ENST00000452408 1331 ntBASIC20.81■□□□□ 0.92
HIPK3Q9H422 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HIPK3Q9H422 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HIPK3Q9H422 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
HIPK3Q9H422 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.81■□□□□ 0.92
HIPK3Q9H422 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.81■□□□□ 0.92
HIPK3Q9H422 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.81■□□□□ 0.92
HIPK3Q9H422 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HIPK3Q9H422 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC20.81■□□□□ 0.92
HIPK3Q9H422 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
HIPK3Q9H422 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.81■□□□□ 0.92
HIPK3Q9H422 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
HIPK3Q9H422 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.81■□□□□ 0.92
HIPK3Q9H422 AC009078.2-202ENST00000463353 338 ntBASIC20.81■□□□□ 0.92
HIPK3Q9H422 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC20.81■□□□□ 0.92
HIPK3Q9H422 AC079602.3-201ENST00000623931 403 ntBASIC20.81■□□□□ 0.92
HIPK3Q9H422 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HIPK3Q9H422 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.81■□□□□ 0.92
HIPK3Q9H422 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HIPK3Q9H422 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.81■□□□□ 0.92
HIPK3Q9H422 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HIPK3Q9H422 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.81■□□□□ 0.92
HIPK3Q9H422 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HIPK3Q9H422 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HIPK3Q9H422 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HIPK3Q9H422 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HIPK3Q9H422 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
HIPK3Q9H422 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HIPK3Q9H422 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.8■□□□□ 0.92
HIPK3Q9H422 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
HIPK3Q9H422 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HIPK3Q9H422 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HIPK3Q9H422 AL023284.2-201ENST00000405850 579 ntBASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms