Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC113Q9H0I3 SDHAP1-207ENST00000440850 2000 ntBASIC21.12■□□□□ 0.97
CCDC113Q9H0I3 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC113Q9H0I3 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC113Q9H0I3 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC113Q9H0I3 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC113Q9H0I3 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC113Q9H0I3 ECEL1P3-201ENST00000427961 737 ntBASIC21.12■□□□□ 0.97
CCDC113Q9H0I3 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC113Q9H0I3 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC113Q9H0I3 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC113Q9H0I3 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
CCDC113Q9H0I3 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC113Q9H0I3 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC113Q9H0I3 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC113Q9H0I3 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 GRAMD4P8-201ENST00000605465 1115 ntBASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 AC010947.1-201ENST00000623454 693 ntBASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 AC133561.5-201ENST00000635547 218 ntBASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC113Q9H0I3 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC113Q9H0I3 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 AL158211.5-201ENST00000623583 2518 ntBASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 CRYGFP-201ENST00000418459 633 ntBASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 SLC25A1P4-201ENST00000567977 778 ntBASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 LINC01023-201ENST00000606054 436 ntBASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC113Q9H0I3 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC113Q9H0I3 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC113Q9H0I3 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
CCDC113Q9H0I3 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC21.08■□□□□ 0.97
CCDC113Q9H0I3 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC113Q9H0I3 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.08■□□□□ 0.97
CCDC113Q9H0I3 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CCDC113Q9H0I3 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.08■□□□□ 0.97
CCDC113Q9H0I3 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC113Q9H0I3 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms