Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM4Q9C037 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
TRIM4Q9C037 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.99■□□□□ 0.63
TRIM4Q9C037 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM4Q9C037 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
TRIM4Q9C037 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM4Q9C037 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM4Q9C037 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM4Q9C037 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM4Q9C037 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.99■□□□□ 0.63
TRIM4Q9C037 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM4Q9C037 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.99■□□□□ 0.63
TRIM4Q9C037 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM4Q9C037 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM4Q9C037 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.99■□□□□ 0.63
TRIM4Q9C037 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.99■□□□□ 0.63
TRIM4Q9C037 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM4Q9C037 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.99■□□□□ 0.63
TRIM4Q9C037 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.99■□□□□ 0.63
TRIM4Q9C037 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.99■□□□□ 0.63
TRIM4Q9C037 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM4Q9C037 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM4Q9C037 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM4Q9C037 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM4Q9C037 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM4Q9C037 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
TRIM4Q9C037 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM4Q9C037 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM4Q9C037 AC005332.7-201ENST00000614046 2005 ntBASIC18.98■□□□□ 0.63
TRIM4Q9C037 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM4Q9C037 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
TRIM4Q9C037 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM4Q9C037 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.98■□□□□ 0.63
TRIM4Q9C037 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM4Q9C037 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM4Q9C037 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM4Q9C037 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM4Q9C037 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM4Q9C037 PRKY-204ENST00000533551 1019 ntBASIC18.98■□□□□ 0.63
TRIM4Q9C037 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.98■□□□□ 0.63
TRIM4Q9C037 C2orf69P4-201ENST00000565394 541 ntBASIC18.98■□□□□ 0.63
TRIM4Q9C037 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.98■□□□□ 0.63
TRIM4Q9C037 AL356652.1-201ENST00000615962 565 ntBASIC18.98■□□□□ 0.63
TRIM4Q9C037 AC097493.4-201ENST00000641197 219 ntBASIC18.98■□□□□ 0.63
TRIM4Q9C037 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
TRIM4Q9C037 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM4Q9C037 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM4Q9C037 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM4Q9C037 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM4Q9C037 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM4Q9C037 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM4Q9C037 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.98■□□□□ 0.63
TRIM4Q9C037 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
TRIM4Q9C037 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM4Q9C037 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM4Q9C037 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM4Q9C037 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM4Q9C037 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM4Q9C037 AC079598.2-202ENST00000546624 1451 ntBASIC18.97■□□□□ 0.63
TRIM4Q9C037 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
TRIM4Q9C037 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM4Q9C037 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM4Q9C037 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
TRIM4Q9C037 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
TRIM4Q9C037 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.97■□□□□ 0.63
TRIM4Q9C037 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM4Q9C037 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.97■□□□□ 0.63
TRIM4Q9C037 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.97■□□□□ 0.63
TRIM4Q9C037 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.97■□□□□ 0.63
TRIM4Q9C037 CD177P1-201ENST00000606252 935 ntBASIC18.97■□□□□ 0.63
TRIM4Q9C037 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
TRIM4Q9C037 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
TRIM4Q9C037 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.97■□□□□ 0.63
TRIM4Q9C037 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM4Q9C037 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM4Q9C037 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM4Q9C037 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM4Q9C037 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
TRIM4Q9C037 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM4Q9C037 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM4Q9C037 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
TRIM4Q9C037 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.97■□□□□ 0.63
TRIM4Q9C037 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM4Q9C037 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
TRIM4Q9C037 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM4Q9C037 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM4Q9C037 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM4Q9C037 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
TRIM4Q9C037 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM4Q9C037 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.96■□□□□ 0.63
TRIM4Q9C037 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM4Q9C037 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM4Q9C037 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.96■□□□□ 0.63
TRIM4Q9C037 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM4Q9C037 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM4Q9C037 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM4Q9C037 AL049597.2-201ENST00000565575 961 ntBASIC18.96■□□□□ 0.63
TRIM4Q9C037 AL049637.2-201ENST00000641778 930 ntBASIC18.96■□□□□ 0.63
TRIM4Q9C037 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM4Q9C037 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms