Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PAAF1Q9BRP4 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
PAAF1Q9BRP4 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PAAF1Q9BRP4 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PAAF1Q9BRP4 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PAAF1Q9BRP4 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.37■□□□□ 0.85
PAAF1Q9BRP4 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PAAF1Q9BRP4 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PAAF1Q9BRP4 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PAAF1Q9BRP4 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.37■□□□□ 0.85
PAAF1Q9BRP4 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
PAAF1Q9BRP4 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PAAF1Q9BRP4 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PAAF1Q9BRP4 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 TEX21P-204ENST00000641479 1693 ntBASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 ILF2-202ENST00000368681 726 ntTSL 2 BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 GCSHP2-201ENST00000560971 527 ntBASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PAAF1Q9BRP4 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PAAF1Q9BRP4 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PAAF1Q9BRP4 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
PAAF1Q9BRP4 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PAAF1Q9BRP4 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
PAAF1Q9BRP4 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PAAF1Q9BRP4 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PAAF1Q9BRP4 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.34■□□□□ 0.85
PAAF1Q9BRP4 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PAAF1Q9BRP4 HOMER2P1-201ENST00000455653 964 ntBASIC20.34■□□□□ 0.85
PAAF1Q9BRP4 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.34■□□□□ 0.85
PAAF1Q9BRP4 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.34■□□□□ 0.85
PAAF1Q9BRP4 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.34■□□□□ 0.85
PAAF1Q9BRP4 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PAAF1Q9BRP4 AC073130.3-201ENST00000624389 2278 ntBASIC20.34■□□□□ 0.85
PAAF1Q9BRP4 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PAAF1Q9BRP4 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PAAF1Q9BRP4 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
PAAF1Q9BRP4 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PAAF1Q9BRP4 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.34■□□□□ 0.85
PAAF1Q9BRP4 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PAAF1Q9BRP4 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
PAAF1Q9BRP4 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PAAF1Q9BRP4 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.33■□□□□ 0.85
PAAF1Q9BRP4 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PAAF1Q9BRP4 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PAAF1Q9BRP4 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.33■□□□□ 0.85
PAAF1Q9BRP4 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PAAF1Q9BRP4 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC20.33■□□□□ 0.85
PAAF1Q9BRP4 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC20.33■□□□□ 0.85
PAAF1Q9BRP4 AL023284.2-201ENST00000405850 579 ntBASIC20.33■□□□□ 0.85
PAAF1Q9BRP4 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.33■□□□□ 0.85
PAAF1Q9BRP4 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.33■□□□□ 0.85
PAAF1Q9BRP4 FAM86EP-206ENST00000510506 987 ntBASIC20.33■□□□□ 0.85
PAAF1Q9BRP4 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC20.33■□□□□ 0.85
PAAF1Q9BRP4 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.33■□□□□ 0.85
PAAF1Q9BRP4 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.33■□□□□ 0.85
PAAF1Q9BRP4 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.33■□□□□ 0.85
PAAF1Q9BRP4 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
PAAF1Q9BRP4 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PAAF1Q9BRP4 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.33■□□□□ 0.84
PAAF1Q9BRP4 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms